PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098205001
Common NameGSBRNA2T00098205001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 188aa    MW: 20405.8 Da    PI: 4.5083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098205001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.6e-181464255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++k++ +Wv+eIr+p     r   r++lg+f t+e+Aa a++ a+++l+g
  GSBRNA2T00098205001 14 LYKGVRQRKNSDKWVSEIREP-----RtpNRIWLGTFSTPEMAAIAYDVAALALKG 64
                         69******************9.....4478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.14E-281374No hitNo description
PfamPF008472.3E-111364IPR001471AP2/ERF domain
SMARTSM003805.3E-301478IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-191474IPR016177DNA-binding domain
PROSITE profilePS5103220.7191472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-271474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPGTSKENGG RHPLYKGVRQ RKNSDKWVSE IREPRTPNRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTQTELN FPNSASSFPV PATMSPRDIQ AAAASAAAAF GAARDAIVMT NNNSATSSVE  120
RSNVMMMNGS YEDTYGFMDE DFIFDMPNML MNMAEGMLLS PPRQPTFDAA SDGYGYTGAD  180
DYLWSFP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098205001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133086.11e-136PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-86ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A078JXJ71e-135A0A078JXJ7_BRANA; BnaA03g56380D protein
TrEMBLM4E2R91e-135M4E2R9_BRARP; Uncharacterized protein
STRINGBra023070.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.17e-78ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]