PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00097934001

Common Name

GSBRNA2T00097934001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 293aa MW: 33615.8 Da PI: 8.1586

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00097934001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.5e-18	99	151	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k GSBRNA2T00097934001 99 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 151 4568889*********************************************9 PP
2	HD-ZIP_I/II	128.6	2.7e-41	97	188	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rl+ eqv++LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++e GSBRNA2T00097934001 97 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAE 186 69**************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 l GSBRNA2T00097934001 187 LV 188 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.27E-19	85	155	IPR009057	Homeodomain-like
SMART	SM00389	2.6E-17	96	157	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.552	97	153	IPR001356	Homeobox domain
CDD	cd00086	2.07E-16	98	154	No hit	No description
Pfam	PF00046	2.9E-15	99	151	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.6E-19	101	161	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	124	133	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	128	151	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	133	149	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.9E-15	153	192	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MILKVLNPFM NASSLPNSHN YMRLVWISTL MGKFCCLCFG VGGGGDYMMN RSMSFTGVSD 60 HHHLTQKTPT TTNMNDHDQL GEEDNLSDDG SHMMLGEKKK RLNLEQVRAL EKSFELGNKL 120 EPERKMQLAK ALGLQPRQIA IWFQNRRARW KTKQLERDYD SLKKQFDVLK SDNDSLLAHN 180 KKLHAELVAL KKQDRKEPSK IKRELAEASW SNNEDTDNNN NSDINHVNMI KDLFPSSVRS 240 ATTTTTSSHI DHQVVQDQGF RNMFNGIDET TSAGYWAWPD QQQQHQSHHQ FN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	153	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00097934001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189232	0.0	AC189232.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013N08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013618604.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT7
Refseq	XP_013659904.1	0.0	homeobox-leucine zipper protein HAT7
Swissprot	Q00466	1e-151	HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBL	A0A078JXX6	0.0	A0A078JXX6_BRANA; BnaCnng67720D protein
STRING	Bo2g012410.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3095	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	1e-131	homeobox 3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]