PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097706001
Common NameGSBRNA2T00097706001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 382aa    MW: 42773.1 Da    PI: 6.8458
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097706001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.57.4e-3446100155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl
  GSBRNA2T00097706001  46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 100
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.22743103IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-3144101IPR009057Homeodomain-like
SuperFamilySSF466894.3E-1745101IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2346101IPR006447Myb domain, plants
PfamPF002494.4E-104899IPR001005SANT/Myb domain
PfamPF143791.2E-25148193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MYYQNQHQGK SILSSSRMHL ASERHPFLRG GNSPGDSGLI LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKTIMKV MGIPGLTLYH LKSHLQKYRL SKNLNGQANS GLNKIGMMTM  120
IEEKSPDADE IQSESLSIGP QPNKNSPIGE ALQMQIEVQR RLHEQLEVQR HLQLRIEAQG  180
KYLQSVLEKA QETLGRQNLS PAGIEAAKVQ LSELVSKVSA EYPNTSFLDP KEFQNLCPQQ  240
MQTAYPQDSC LTSSEGAQKN PKMLGLRTYL GDSTSEQKEV IEEPLFQRME LTWNEGLRGN  300
PYLSTMVTDA EQRVSYSERS PSTLTMGVGM HGHRGHQQGS NDEDHKLETQ STKTELDLNT  360
HVENCCTTRP KQFDLNGFSW N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-2046102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-2046102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-2046102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-2046102157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097706001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2220890.0HQ222089.1 Arabidopsis thaliana myb family transcription factor (MYR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130413.10.0PREDICTED: myb-related protein 2 isoform X1
SwissprotQ9SQQ90.0PHL9_ARATH; Myb-related protein 2
TrEMBLA0A078ILQ80.0A0A078ILQ8_BRANA; BnaA05g37380D protein
STRINGBra031952.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]