PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00097679001

Common Name

GSBRNA2T00097679001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 285aa MW: 31607.8 Da PI: 9.1033

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00097679001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	67	8.3e-21	31	110	15	96
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalp 96 e++++l +++++ms++aerda+++ern+a+s+k +a+a+rd a++qrdkalaer+kal+erdn+++al+++ensl++al+ GSBRNA2T00097679001 31 EQHNALV--MNKKIMSILAERDAAVHERNQAVSAKMEALAARDQALQQRDKALAERDKALIERDNAFAALQHHENSLNFALS 110 2556666..99****************************************************************9986654 PP
2	GAGA_bind	239.2	2.9e-73	137	284	154	301
GAGA_bind 154 qrakkpkekkak..kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241 +++k+ k+kk + k kk +e+ + v++++ ++ k+++++ ++ln v++De t+PvPvC+CtG+ +qCYkWGnGGWqS+CCtt++S+ GSBRNA2T00097679001 137 NTTKSIKRKKDNkpKGKKVGEDLNLLVAAPG--KKCKKDWDTNHFGLNLVTFDEKTMPVPVCTCTGSAHQCYKWGNGGWQSSCCTTSLSQ 224 3333334444441144455777777788888..57***************************************************** PP GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 yPLP+++++r++R++grKmS+++f++lL++LaaeG dls vDLkd+WA+HGtn+++ti+ GSBRNA2T00097679001 225 YPLPQMPNKRHSRVGGRKMSGNVFSRLLSHLAAEGCDLSSHVDLKDYWARHGTNRYITIK 284 *********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.0E-126	1	284	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.2E-86	18	284	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0050793	Biological Process	regulation of developmental process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MENGGQYANG SDYLKGAHSM WNMLPHHQIK EQHNALVMNK KIMSILAERD AAVHERNQAV 60 SAKMEALAAR DQALQQRDKA LAERDKALIE RDNAFAALQH HENSLNFALS GGKRCQGGDD 120 DDVLFTIDDL CPTTSTNTTK SIKRKKDNKP KGKKVGEDLN LLVAAPGKKC KKDWDTNHFG 180 LNLVTFDEKT MPVPVCTCTG SAHQCYKWGN GGWQSSCCTT SLSQYPLPQM PNKRHSRVGG 240 RKMSGNVFSR LLSHLAAEGC DLSSHVDLKD YWARHGTNRY ITIK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14579	1e-175	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00097679001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633652.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X1
Refseq	XP_013716916.1	0.0	protein BASIC PENTACYSTEINE4
Refseq	XP_013716917.1	0.0	protein BASIC PENTACYSTEINE4
Swissprot	Q8S8C6	1e-159	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A078JRW0	0.0	A0A078JRW0_BRANA; BnaCnng67580D protein
STRING	Bo4g145820.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4090	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-144	basic pentacysteine 4

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]