PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00097300001

Common Name

GSBRNA2T00097300001, LOC106399473

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 173aa MW: 18708.1 Da PI: 7.7891

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00097300001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.2	1.6e-44	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca+dCv++pyfpa++p+kfanvh++FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l GSBRNA2T00097300001 13 PCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPLHQRGDAVSSMVYEANARVRDPVYGCVGSISSLQQQIDVL 102 7*************************************************************************************** PP DUF260 91 kaelallkee 100 + +lal+++e GSBRNA2T00097300001 103 QGQLALAQAE 112 ***99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.049	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-44	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE 60 LPLHQRGDAV SSMVYEANAR VRDPVYGCVG SISSLQQQID VLQGQLALAQ AEVVHLRVRH 120 STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGIFSHMDMV DEASLGESMW SC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	9	114	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00097300001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473839	1e-173	AB473839.1 Arabidopsis thaliana ASL6 mRNA for ASYMMETRIC LEAVES2-like 6 protein, complete cds.
GenBank	BT015067	1e-173	BT015067.1 Arabidopsis thaliana At1g31320 gene, complete cds.
GenBank	BT015665	1e-173	BT015665.1 Arabidopsis thaliana At1g31320 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595802.1	1e-126	PREDICTED: LOB domain-containing protein 4
Refseq	XP_013695413.1	1e-126	LOB domain-containing protein 4
Swissprot	Q9SHE9	1e-105	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A078INQ1	1e-124	A0A078INQ1_BRANA; BnaCnng19520D protein
TrEMBL	A0A0D3D5L9	1e-124	A0A0D3D5L9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EJ49	1e-124	A0A3P6EJ49_BRAOL; Uncharacterized protein
STRING	Bo7g041000.1	1e-125	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-103	LOB domain-containing protein 4

Link Out ? help Back to Top
Entrez Gene	106399473

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]