PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00096699001

Common Name

GSBRNA2T00096699001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 938aa MW: 103059 Da PI: 5.7912

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00096699001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.7e-29	592	643	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ GSBRNA2T00096699001 592 AEKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 643 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	2.26E-5	216	287	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.723	582	663	IPR003035	RWP-RK domain
Pfam	PF02042	7.1E-26	595	643	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.19E-23	831	926	No hit	No description
SMART	SM00666	1.2E-27	841	923	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.8E-27	841	922	No hit	No description
Pfam	PF00564	9.3E-20	841	922	IPR000270	PB1 domain
PROSITE profile	PS51745	25.856	841	923	IPR000270	PB1 domain
CDD	cd06407	1.13E-33	842	922	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MCDPDDDDSA RNGVTPPASS RRSRELLMDV DDLDLDGSWP LDQIPYLSSS NRMISPIFVS 60 SSSEQPCSPL WAFSDGGLNG NHATNGGYDG EKISSASGVS SFRLADYPLF LPYASSSSIA 120 ETTTEKHNGF QFPSPLMSLV PSENTDNYCV IKERMTQALR YFKESTEQHV LAQVWAPVRK 180 NGRDLLTTLG QPFVLNPNGN GLNQYRMISL TYMFSVDSDC DIELGLPGRV FRQKLPEWTP 240 NVQYYSSKEF SRLDHALHYN VRGTLALPVF NPSGESCIGV VELIMTSEKI HYAPEVDKVC 300 KALEAVNLKS SEILDHQTTQ ICNESRQNAL AEILEVLTVV CETHNLPLAQ TWVPCQHGSV 360 LANGGGLKKN CTSFDGSCMG QVCMSTTDMA CYVVDAHVWG FRDACLEHHL QKGQGVAGRA 420 FLNGGSCFCR DITKFCKTQY PLVHYALMFK LTSCFAISLQ SSYTVDDSYI LEFFLPSTIT 480 DDQEQDSLLG SLLVTMKEHF QSLRVASGVD FGEDDDKLSF EIIQALPDKK VRSKIESIRV 540 PFSGFKSNAT ERLLIPQPAA QSSNPANEKV NVATANGVVK EKKKTEKKRG KAEKTISLDV 600 LQQYFTGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI KKVNRSITKL KRVIESVQGT 660 DGGLDLTSMA VSSIPWTNGQ TGAQPLNSPS GSKPPELPNT SHSPNHWSSD HSPQEPNGSP 720 ELPSNGHKRS RTGDESAGTP TSHGSCDGNQ LDETKVPNQD PLFTVGASPG LCFPPYSRDH 780 DVSAASFAIP NRLLGNIDHF RGMPIEDAGS SKDLRNLCSS TPFDDKFPEP NWMNNDNNNI 840 TVTIKASYKE DIIRFKISSG SGIMELKDEV AKRLKLDAGT FDIKYLDDDN EWVLIACDAD 900 LQECLEIPRL SRTSVVRLLV HDATTNLGSS CESTGEL*

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MCDPDDDDSA RNGVTPPASS RRSRELLMDV DDLDLDGSWP LDQIPYLSSS NRMISPIFVS  60
SSSEQPCSPL WAFSDGGLNG NHATNGGYDG EKISSASGVS SFRLADYPLF LPYASSSSIA  120
ETTTEKHNGF QFPSPLMSLV PSENTDNYCV IKERMTQALR YFKESTEQHV LAQVWAPVRK  180
NGRDLLTTLG QPFVLNPNGN GLNQYRMISL TYMFSVDSDC DIELGLPGRV FRQKLPEWTP  240
NVQYYSSKEF SRLDHALHYN VRGTLALPVF NPSGESCIGV VELIMTSEKI HYAPEVDKVC  300
KALEAVNLKS SEILDHQTTQ ICNESRQNAL AEILEVLTVV CETHNLPLAQ TWVPCQHGSV  360
LANGGGLKKN CTSFDGSCMG QVCMSTTDMA CYVVDAHVWG FRDACLEHHL QKGQGVAGRA  420
FLNGGSCFCR DITKFCKTQY PLVHYALMFK LTSCFAISLQ SSYTVDDSYI LEFFLPSTIT  480
DDQEQDSLLG SLLVTMKEHF QSLRVASGVD FGEDDDKLSF EIIQALPDKK VRSKIESIRV  540
PFSGFKSNAT ERLLIPQPAA QSSNPANEKV NVATANGVVK EKKKTEKKRG KAEKTISLDV  600
LQQYFTGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI KKVNRSITKL KRVIESVQGT  660
DGGLDLTSMA VSSIPWTNGQ TGAQPLNSPS GSKPPELPNT SHSPNHWSSD HSPQEPNGSP  720
ELPSNGHKRS RTGDESAGTP TSHGSCDGNQ LDETKVPNQD PLFTVGASPG LCFPPYSRDH  780
DVSAASFAIP NRLLGNIDHF RGMPIEDAGS SKDLRNLCSS TPFDDKFPEP NWMNNDNNNI  840
TVTIKASYKE DIIRFKISSG SGIMELKDEV AKRLKLDAGT FDIKYLDDDN EWVLIACDAD  900
LQECLEIPRL SRTSVVRLLV HDATTNLGSS CESTGEL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00096699001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022561439.1	0.0	protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A078IKJ8	0.0	A0A078IKJ8_BRANA; BnaC07g38670D protein
STRING	Bo7g109290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]