PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096456001
Common NameGSBRNA2T00096456001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YC
Protein Properties Length: 294aa    MW: 32473.9 Da    PI: 4.7033
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096456001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC58.51.5e-186861898
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++++P arikki++adedv +i+  +Pvl+sk+ elf+ +l  r++  + e   +t+    ++ +v+r ++fdfl ++v +
  GSBRNA2T00096456001  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITIERGAKTVSSLHLKHCVERYNVFDFLREVVSK 86
                         5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.6E-25372IPR009072Histone-fold
SuperFamilySSF471131.04E-19492IPR009072Histone-fold
PfamPF008085.4E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITIERGAK  60
TVSSLHLKHC VERYNVFDFL REVVSKVPDY GQAQGQAHGT GDVTMDDRTI SKRRKPISDE  120
VNDSDEENKK SKTQEVGNAK PSGRGSRGRG RGRGRGGRAA KAAERENLNR EVELETAMAE  180
QPPPQDSNQM HVSASSPQEN EKKDVDGDIA ASKEDTKQQL QNPKEGIDID LNAESLDLNE  240
TKPAPVPAAD KATTSEEYPG WPMELGKIDP TQLASLGKRI DEDEDEEDYD EEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146155RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.127741e-166seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096456001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530670.0AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673159.10.0dr1-associated corepressor-like
RefseqXP_022567038.10.0dr1-associated corepressor-like
TrEMBLA0A078IKA50.0A0A078IKA5_BRANA; BnaC01g38370D protein
TrEMBLA0A3P6FYF80.0A0A3P6FYF8_BRAOL; Uncharacterized protein
STRINGBo1g139230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-136nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]