PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096219001
Common NameGSBRNA2T00096219001, LOC106347358
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 577aa    MW: 64367.5 Da    PI: 4.6252
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096219001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.21.2e-1332065763374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ lykal+++e +   s+e+laa+++++ev+P++k
  GSBRNA2T00096219001 206 QILISCAHALSEGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SDERLAAMQVLFEVCPCFK 292
                          78*****************************************************************9...9****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          f++l+aN aI +++ gee+vHiiDfdi+qG Q+++L++++a+ p +g p+lR+Tgv++pes+  s   l+ +g rL+++A+  gv+f f+
  GSBRNA2T00096219001 293 FGFLAANDAIIDSIRGEEEVHIIDFDINQGNQYMTLIKTIADLPvKGRPRLRLTGVDDPESVqrSVGGLRIIGLRLEQLAKDHGVSFTFK 382
                          ******************************************9999**************9989999*********************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + va++++ +++++L +kpgEal+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F+ rf+ea eyysa+fd
  GSBRNA2T00096219001 383 A-VASKTNIVSPSTLGCKPGEALIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFMEAYEYYSAVFD 471
                          *.7*************************************************************************************** PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          sl+++lpres+er++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s ++++++++l+++ +   y+v+ee g+l 
  GSBRNA2T00096219001 472 SLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFSPRPMSGRVTSNIESLIKRDYCSKYKVKEEMGELH 561
                          ****************************************************************************666*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          ++W++++L+++SaWr
  GSBRNA2T00096219001 562 FCWEEKSLIVASAWR 576
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.266178556IPR005202Transcription factor GRAS
PfamPF035144.1E-131206576IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MSLVRSAELS AAAAYRNPKL YSLNENGYNT GGGTSVEMFD PDRSKNTCLT DDSYPSQSYE  60
KYFLDSPTDE FAQQQHPVGS GGASVSSFGS LESFPYQSRP VLGCSMEYQL PFDSTSTSSM  120
SLFGGYQVAT QSPSMEFDDE QMRSKIQELE RALLDDEDDD DKMIGIDQLM EIDNEWSPKE  180
SSSEDSNSHA SSKEVISQST TTTPKQILIS CAHALSEGKS EEALSMVNEL RQIVSIQGDP  240
SQRIAAYMVE GLAARMAASG KFLYKALKCK EPPSDERLAA MQVLFEVCPC FKFGFLAAND  300
AIIDSIRGEE EVHIIDFDIN QGNQYMTLIK TIADLPVKGR PRLRLTGVDD PESVQRSVGG  360
LRIIGLRLEQ LAKDHGVSFT FKAVASKTNI VSPSTLGCKP GEALIVNFAF QLHHMPDESV  420
TTVNQRDELL HMVKSLNPKL VTVVEQDVNT NTSPFFPRFM EAYEYYSAVF DSLDMTLPRE  480
SQERMNVERQ CLARDIVNIV ACEGEERIER YEVAGKWRAR MMMAGFSPRP MSGRVTSNIE  540
SLIKRDYCSK YKVKEEMGEL HFCWEEKSLI VASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-562065766375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096219001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013642336.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A078IH380.0A0A078IH38_BRANA; BnaA06g15170D protein
STRINGBo5g034360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]