PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00096130001 | ||||||||
Common Name | GSBRNA2T00096130001, LOC106444623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28799.2 Da PI: 8.8673 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.6e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + +G +W+t++ + g+ R +k+c++rw +yl GSBRNA2T00096130001 16 KGFWSPEEDEKLRSFILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 63 688*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3.1e-14 | 74 | 114 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eE+e+++ + lG++ W++Ia+ ++ gRt++++k++w+++l GSBRNA2T00096130001 74 AEEEEIILTFHSSLGNK-WSRIAKFLP-GRTDNEIKNYWHSHL 114 7****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.943 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-27 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-9 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-11 | 17 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.55E-8 | 19 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-20 | 19 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.62 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-12 | 68 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-23 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.71E-10 | 73 | 114 | No hit | No description |
Pfam | PF00249 | 2.7E-12 | 74 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MLKTIAVERP KQRQRKGFWS PEEDEKLRSF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI 60 NYLRPGLKRD MINAEEEEII LTFHSSLGNK WSRIAKFLPG RTDNEIKNYW HSHLKKKWLK 120 SQKLQHATSI STSSESLVAC GRRNPQTLIS LPEKTSSSPS QESNDNNNNY SCSSGPEIAR 180 LFFSEWFTSS DPYFDHSSNL TDSNHIQTPN IQGPVSDYEE SGDVNQFYYN EMVMMSNSNW 240 TLNDVVFGSK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-24 | 16 | 117 | 7 | 107 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00096130001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519609 | 1e-130 | AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013741531.1 | 0.0 | transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 1e-129 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A078IJW6 | 0.0 | A0A078IJW6_BRANA; BnaA03g47510D protein | ||||
STRING | Bra019154.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 1e-105 | myb domain protein 18 |
Link Out ? help Back to Top | |
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Entrez Gene | 106444623 |
Publications ? help Back to Top | |||
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