PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096059001
Common NameGSBRNA2T00096059001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 710aa    MW: 79094.6 Da    PI: 4.4343
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096059001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.23.2e-14604651653
                          S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                          ++t+  +++L + F++nryp+ ++re LAk+l++t +qV+ WF N R 
  GSBRNA2T00096059001 604 KHTNPRTQRLFKSFQENRYPDITTRENLAKELKMTVKQVSSWFNNTRF 651
                          5688899**************************************996 PP
2PHD39.61.2e-13265320151
                          SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ Cg+   + +++++lCdg C++ fH++C++++l++e++p +  +wlC+ C++k
  GSBRNA2T00096059001 265 FCAKCGSkdVHVDNDIILCDGfCDRGFHQYCVEPPLRKEDIPPDdeSWLCPGCDCK 320
                          699***965556********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.28E-13256320IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.3E-13261319IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.101263320IPR019787Zinc finger, PHD-finger
SMARTSM002494.0E-9265318IPR001965Zinc finger, PHD-type
PfamPF006283.8E-11265320IPR019787Zinc finger, PHD-finger
CDDcd155041.07E-27265317No hitNo description
PROSITE patternPS013590266317IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007113.021596656IPR001356Homeobox domain
SMARTSM003891.6E-9598660IPR001356Homeobox domain
PfamPF000469.9E-12605651IPR001356Homeobox domain
SuperFamilySSF466895.13E-13605656IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-13607663IPR009057Homeodomain-like
CDDcd000862.50E-11610650No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MHSANRRRTR SSGSALDQTN LEAGGEVTPS VDKVPEQSNA SVPLQTPEAV EHLEEPRTNY  60
GNGNRMMEED KGVSNVFSGE EQQSTTPVTG KKSSGFHREL VLGLPCRGQF EFHRSSNKLG  120
GGGERNVVVS SHKRAKRSKE AAGSSSVDVN ATPLDGSKPR KTYTKKVEVR EDDEYTRIKK  180
KLRYFLNRIR YEQSLIDAYS LEGWKGSSVE KLRPEKELER ARKEILRRKV KIRELFQHVD  240
TLCAEGSIPE SLFDSGGEIS SEDIFCAKCG SKDVHVDNDI ILCDGFCDRG FHQYCVEPPL  300
RKEDIPPDDE SWLCPGCDCK DYSFDLLNDS LGTKLSVSDS WEKVFPEAAA AMAGGDQTLD  360
CDLPSDDSED EEFDPNGLND NADDEDGSDD SDESENEDGS GGESDCTSAS DEMIESVKEA  420
KDIMDLPSDD SEDDDYDPDA PIRDEDKMQE SSNSDNTSDS EDLETSFKGD ESNQQNEVTP  480
RGKPGSESDT GIDDDGIVDV PGRRKVERLD YKKLYDDEYE NVPTSSSDDE DWDKTAGKED  540
FESGEEGDTV PLKQHSEAED HTSTKKPRQT PKRESKRDTL KAPQEVPREN GFSGEKSSSA  600
VYSKHTNPRT QRLFKSFQEN RYPDITTREN LAKELKMTVK QVSSWFNNTR FSTNKRMASK  660
EDDEKLRTGE GETTVAGSSE QTMETKSVVE NNKSGASEST NTGSRKRRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176182RIKKKLR
2501508GRRKVERL
3704708RKRRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Primarily detected in root tissue.
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096059001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111807.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_009111814.10.0PREDICTED: homeobox protein HAT3.1
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A078ILC80.0A0A078ILC8_BRANA; BnaA01g26090D protein
STRINGBra038213.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.10.0Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]