PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095580001
Common NameGSBRNA2T00095580001, LOC106416726
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 407aa    MW: 46269.1 Da    PI: 6.5124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095580001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.29.5e-51511762128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ 
  GSBRNA2T00095580001  51 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 139
                          79***************************.89***************888889************************************* PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + s++ + +glkktLvfy+g+apkg++t+W+m+eyrl
  GSBRNA2T00095580001 140 IRSESARPIGLKKTLVFYSGKAPKGTRTSWIMNEYRL 176
                          ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100556.27250197IPR003441NAC domain
SuperFamilySSF1019411.83E-5650197IPR003441NAC domain
PfamPF023653.3E-2552176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAMVSSTTST MTMSNQVNNN SDKGVQEDAH RHENHAQNDD EADDHDHDMV MPGFRFHPTE  60
EELIEFYLRR KVEGKRFNVE LITFLDLYRY DPWELPAMAA IGEKEWYFYV PRDRKYRNGD  120
RPNRVTTSGY WKATGADRMI RSESARPIGL KKTLVFYSGK APKGTRTSWI MNEYRLPHHE  180
TEKYQKAEIS LCRVYKRPGV EDHLSLPRSL STRHHNHTSS SSRLALRQQQ QHHSSSSNHS  240
DNNLNSNNNL EKLSTEYFGD GSSITTTNSN SDVTIALANQ NIYRPMPYGV SNTPMISTTN  300
KEDDENAIVD DLQRLVNYQI SDGGSNINHQ YYQIAQQFHN QQEVNANALQ LVAGATTVAL  360
TPQTQAALAM NMIPAGTIPN SALWDLWNPL VPDGNRDHYT DSFQGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-57411978165NO APICAL MERISTEM PROTEIN
1ut4_B4e-57411978165NO APICAL MERISTEM PROTEIN
1ut7_A4e-57411978165NO APICAL MERISTEM PROTEIN
1ut7_B4e-57411978165NO APICAL MERISTEM PROTEIN
3swm_A5e-574119711168NAC domain-containing protein 19
3swm_B5e-574119711168NAC domain-containing protein 19
3swm_C5e-574119711168NAC domain-containing protein 19
3swm_D5e-574119711168NAC domain-containing protein 19
3swp_A5e-574119711168NAC domain-containing protein 19
3swp_B5e-574119711168NAC domain-containing protein 19
3swp_C5e-574119711168NAC domain-containing protein 19
3swp_D5e-574119711168NAC domain-containing protein 19
4dul_A4e-57411978165NAC domain-containing protein 19
4dul_B4e-57411978165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095580001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894520.0AC189452.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB072E02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713097.10.0NAC domain-containing protein 35
SwissprotQ9ZVP80.0NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A078FXG80.0A0A078FXG8_BRANA; BnaC09g21000D protein
STRINGBo9g071690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.20.0NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  4. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]