PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095550001
Common NameGSBRNA2T00095550001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 492aa    MW: 55663.2 Da    PI: 6.7008
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095550001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.42.1e-1997140245
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                          + en+  rq tf+kR+ngilKKA+ELS+LCd++  +++fs+ gk
  GSBRNA2T00095550001  97 KLENTNGRQATFAKRKNGILKKANELSILCDIDLILLMFSPGGK 140
                          6799************************************9986 PP
2K-box13.82.4e-06196272986
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                           +++++e l+++++ L+++i+++    R   + +L++++ + +L qLe  + +sl + R++K++l  +q + +q  + +
  GSBRNA2T00095550001 196 SSNSTTEDLSTQASILQARISEIHG--RLSYWTELDKINnVDHLGQLEISVRQSLDQLRAHKEHLGQQQQQAMQLENAN 272
                          4667788888888888888888876..5788999*99963889**********************99999999976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-2888147IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.60588140IPR002100Transcription factor, MADS-box
CDDcd002663.93E-2389171No hitNo description
SuperFamilySSF554551.7E-2489180IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-1690110IPR002100Transcription factor, MADS-box
PfamPF003195.9E-1898141IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-16110125IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-16125146IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEIYGGDEKS RARSEEPESL DGGDGSSTER GVYSESFLRV DVEVVEIDKF LTEENSSVGS  60
FSGETFGSHG GEIRFNLFKG KMSCYNRMGR VKLKIKKLEN TNGRQATFAK RKNGILKKAN  120
ELSILCDIDL ILLMFSPGGK PSLCCGRRSS IEEVIAKFSQ VTPEERTKKK VESLETLKKT  180
FLKLDHTVNI RELIASSNST TEDLSTQASI LQARISEIHG RLSYWTELDK INNVDHLGQL  240
EISVRQSLDQ LRAHKEHLGQ QQQQAMQLEN ANFVKDWSTC SLQDGIEIPL EQQLQSMSWI  300
LNSDNTTNII TEEHNPIPKR EVECSASSSF GSYPGYFGTG KSSETSFLDE LNTTNGDIKP  360
QLCTNNNIIP YNSNIMQNDI KHHQTYPPPL PHPPVFNLPS NQREYHMNGF FEAPPQPNGT  420
STYNNNNHNQ ARFGSSSSSL PCSISMLDEY LFSQVKKTRK RHSFFSQRSN TFLFPYFNRC  480
SNRTERERFD E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.284200.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095550001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464590.0DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds.
GenBankDQ6529540.0DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612004.10.0PREDICTED: agamous-like MADS-box protein AGL14 isoform X3
RefseqXP_013713121.10.0agamous-like MADS-box protein AGL30 isoform X3
RefseqXP_013713122.10.0agamous-like MADS-box protein AGL30 isoform X4
SwissprotQ1PFA40.0AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A078FXE90.0A0A078FXE9_BRANA; BnaC09g21150D protein
STRINGBo9g072860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-165AGAMOUS-like 30
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]