PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095255001
Common NameGSBRNA2T00095255001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 217aa    MW: 23921.5 Da    PI: 8.4514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095255001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.9e-2169117355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+taeeAa a+++a+ +++g
  GSBRNA2T00095255001  69 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAALAYDKAAFEFRG 117
                          9*******.**********9...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-3668127No hitNo description
SuperFamilySSF541712.68E-2368126IPR016177DNA-binding domain
PROSITE profilePS5103225.0468125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-3468126IPR001471AP2/ERF domain
SMARTSM003803.9E-3968131IPR001471AP2/ERF domain
PfamPF008473.3E-1568117IPR001471AP2/ERF domain
PRINTSPR003673.1E-126980IPR001471AP2/ERF domain
PRINTSPR003673.1E-1291107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MHSGKRPLSP ESMAGKREEK EELGSCSTLS ESDVSAFVSE LTDQPTPPSV NQPSSLTLQE  60
QSNTRQRNYR GVRQRPWGKW AAEIRDPNKA ARVWLGTFDT AEEAALAYDK AAFEFRGQKA  120
KLNFPEHILT NSSGPYGPYP STATSHDRIT VMSPPAIAPD ILLDQYGQFH SANSDSVANF  180
SLTMSSSSSS LNQQEHIPKL EDGKNVKNIN INKRRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2667125160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095255001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892921e-53AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143835.11e-158PREDICTED: ethylene-responsive transcription factor ERF112-like
SwissprotP930077e-98EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A078FW871e-160A0A078FW87_BRANA; BnaA05g09970D protein
STRINGBra005480.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.19e-79ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]