PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095019001
Common NameGSBRNA2T00095019001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 156aa    MW: 17443.9 Da    PI: 10.2246
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095019001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-173382255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r +k +g+WvAeIr+p   +kr r +lg++ ta  Aa+a++ a  +l+g
  GSBRNA2T00095019001 33 PYRGIRMRK-WGKWVAEIREP---NKRSRLWLGSYTTAVAAARAYDTAVFYLRG 82
                         69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-213391IPR016177DNA-binding domain
PROSITE profilePS5103222.3393390IPR001471AP2/ERF domain
SMARTSM003807.9E-363396IPR001471AP2/ERF domain
CDDcd000185.15E-273492No hitNo description
PRINTSPR003676.9E-123445IPR001471AP2/ERF domain
PfamPF008473.0E-103482IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-303491IPR001471AP2/ERF domain
PRINTSPR003676.9E-127292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEQELQQEPC RRKRRQPPQE EADTHVATRP FKPYRGIRMR KWGKWVAEIR EPNKRSRLWL  60
GSYTTAVAAA RAYDTAVFYL RGPSARLNFP DLLFQDEGHR SAAAAAVDMP ASLIREKAAE  120
VGARVDALLA CSGKSRSPSS PVLVEKPDLN QIPES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153290463ATERF1
3gcc_A2e-153290463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.118670.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095019001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107439.11e-110PREDICTED: ethylene-responsive transcription factor RAP2-1
RefseqXP_013665937.11e-110ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC303e-76RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A078FRF91e-109A0A078FRF9_BRANA; BnaA08g04090D protein
TrEMBLA0A397YI931e-109A0A397YI93_BRACM; Uncharacterized protein
STRINGBra014056.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.15e-65related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]