PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00094960001

Common Name

GSBRNA2T00094960001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 231aa MW: 24847.9 Da PI: 8.4664

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00094960001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.8	1.5e-35	27	84	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + l+cprC+s tkfCyynny+l qPryfCk+CrryWt+GG+lr+vPvGgg+r++ ++ GSBRNA2T00094960001 27 EPLPCPRCNSIITKFCYYNNYNLLQPRYFCKSCRRYWTQGGTLRDVPVGGGTRRSSSK 84 6789*************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	27	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.885	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MPSESNQTRP ARVQGSTAAY PPPNMAEPLP CPRCNSIITK FCYYNNYNLL QPRYFCKSCR 60 RYWTQGGTLR DVPVGGGTRR SSSKRNRSFS SNATTASSSS SSSCSASVIT MSQGTVTNEA 120 KGSNLNSGHG SFASLLSEQS DGAAFLALGS GTGGLDYEFG YGYGLEDMSI GSIPVVGGGD 180 TWQIKEIGGK SGDSLIWPGF NSKQQCLLIP LLFCLFLFRF FCLFSYPREE *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00094960001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY088946	2e-77	AY088946.1 Arabidopsis thaliana clone 103581 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590549.1	1e-100	PREDICTED: dof zinc finger protein DOF1.6
Swissprot	Q9SX97	2e-68	DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBL	A0A078FVB9	1e-167	A0A078FVB9_BRANA; BnaA08g03730D protein
STRING	Bo6g010470.1	1e-100	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9465	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47655.1	1e-67	Dof family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]