PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00094915001
Common NameGSBRNA2T00094915001, LOC106387693
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 327aa    MW: 36958.9 Da    PI: 6.4011
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00094915001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed+ l+d ++++G g+W++ ++  g++R++k+c++rw +yl
  GSBRNA2T00094915001 14 KGPWTQDEDDTLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding48.81.6e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T+eE+e +++++ +lG++  ++Ia+ ++ +Rt++++k++w+++l
  GSBRNA2T00094915001  67 RGNFTEEEEETIINLHSLLGNK-RSSIASNLP-RRTDNEIKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.952961IPR017930Myb domain
SuperFamilySSF466892.55E-2911108IPR009057Homeodomain-like
SMARTSM007172.3E-141363IPR001005SANT/Myb domain
PfamPF002492.6E-161461IPR001005SANT/Myb domain
CDDcd001675.66E-111661No hitNo description
PROSITE profilePS5129424.14262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-2465116IPR009057Homeodomain-like
SMARTSM007171.0E-1266114IPR001005SANT/Myb domain
PfamPF002491.1E-1267112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTQD EDDTLIDHIQ KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF TEEEEETIIN LHSLLGNKRS SIASNLPRRT DNEIKNYWNT HLRKKLLQMG  120
IDPVTHRPRT DHLNVLAALP QLIAAANFNS LLNLNQNVQL DATTLAKAQL LHNMIQVLST  180
NNNNNSSSWP LAMQTSDNLF GQSSYLENQN LFGQSQNLCH ILENSHGEDF IVKNQTNDHP  240
LDSFSSPVQM NAQDDYNSLP LLVPASPGES KQSQMMIKNK SIVHEHQHNQ DTSNPSSSNS  300
TQDHHQPWCD TIDDEASDSY WKDIIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00094915001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895010.0AC189501.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB087B10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013683051.10.0transcription factor MYB41
SwissprotQ9S9Z23e-84MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A078FR680.0A0A078FR68_BRANA; BnaC09g41070D protein
STRINGBra008596.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-167myb domain protein 9
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]