PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00094860001
Common NameGSBRNA2T00094860001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 661aa    MW: 75699.2 Da    PI: 8.5001
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00094860001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-182479156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +++  +++++q+++Le++F+++++p+ ++r +L ++l+L+ +q+k+WFqN+R++ k
  GSBRNA2T00094860001 24 KKNYNRHSNHQIQRLEAYFKECHHPDDSQRLKLGEELKLKPKQIKFWFQNKRTQAK 79
                         6788899**********************************************988 PP
2START128.95.9e-412404603206
                          HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
                START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                          + +a++e++++++ ee +W +ss       +++n++++ ++++  k+  +++e +++++v +m++ +lv+ lld+  +W + +     +a
  GSBRNA2T00094860001 240 MVTAMTEVITLIQTEESMWIQSSidgrlviDQKNYEKTFTNPSHFKSpsSRIESSKEVAVIPMDAKNLVNMLLDTE-KWANLFStivsEA 328
                          6799**************************************7766699***************************.88888877777** PP

                          EEEEEECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEE CS
                START  80 etlevissg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghs 162
                          +t+ v++s     ++  lm+ +l  lspl p R+f+++R+++ql++++wvi+dvS  + ++  e  ++ +v+   +pSg+li+ ++ng s
  GSBRNA2T00094860001 329 KTIHVLESMdprrNFSKLMYEQLHILSPLLPpREFMILRCCQQLEEDVWVIADVSYHQVAFEFEfeTPACVK---RPSGCLIQALPNGLS 415
                          ******998899*999*************999*****************************99766666666...*************** PP

                          EEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 163 kvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          kvtw+ehv++++++  h ++r l+  g   ga++w+ tl+r ce+
  GSBRNA2T00094860001 416 KVTWMEHVEVNEKVRtHRIYRDLLCGGFGYGARRWTVTLERMCER 460
                          **************99***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-18782IPR009057Homeodomain-like
SuperFamilySSF466891.04E-16881IPR009057Homeodomain-like
PROSITE profilePS5007115.8722181IPR001356Homeobox domain
SMARTSM003892.5E-172385IPR001356Homeobox domain
PfamPF000461.0E-152479IPR001356Homeobox domain
CDDcd000861.54E-142482No hitNo description
PROSITE profilePS5084838.84229463IPR002913START domain
SuperFamilySSF559611.29E-26231461No hitNo description
CDDcd088759.09E-92233459No hitNo description
SMARTSM002342.9E-27238460IPR002913START domain
PfamPF018521.8E-34240460IPR002913START domain
Gene3DG3DSA:3.30.530.207.7E-7243426IPR023393START-like domain
SuperFamilySSF559612.47E-7483579No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MASSRDSSSS DEDETSFNTS DGDKKNYNRH SNHQIQRLEA YFKECHHPDD SQRLKLGEEL  60
KLKPKQIKFW FQNKRTQAKT QSEKADNASL RTENMKIRRE NEALQEALNT VTCPPCGGPR  120
PGKGERALYL QNLRTHNTYL REERDRLSSL VNKSEGHSRP SFNALAYHHG PSLYASASNN  180
PHVTYGSSSN YRVEPSSLVR EPYSRERINI GQPPQPRNPI QLQRFQPLSQ MEKVTMTEAM  240
VTAMTEVITL IQTEESMWIQ SSIDGRLVID QKNYEKTFTN PSHFKSPSSR IESSKEVAVI  300
PMDAKNLVNM LLDTEKWANL FSTIVSEAKT IHVLESMDPR RNFSKLMYEQ LHILSPLLPP  360
REFMILRCCQ QLEEDVWVIA DVSYHQVAFE FEFETPACVK RPSGCLIQAL PNGLSKVTWM  420
EHVEVNEKVR THRIYRDLLC GGFGYGARRW TVTLERMCER LHLSSISVFP TTDLAGVVKT  480
IEGRRSLMNL GERMLKNFAW ILKMSGNYDF SQLSETNSSG VRVSVRVNSE AGQPTGLIVC  540
AASSLCLPLS PLEVYNFLTN LEIRHQWDVL CHGYPAAEVA GFATGTDDKN RVNILQTYIY  600
KYQQILYFLA LQPLKNYKYH IVTVVPTLFL ITSLKKHYFL LHFDPASTTF EIQKERLVHK  660
*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in anthers with highest levels in the tapetum and pollen grains, and chalazal end of the embryo sac. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00094860001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659428.10.0homeobox-leucine zipper protein HDG10-like
SwissprotQ9FFI00.0HDG9_ARATH; Homeobox-leucine zipper protein HDG9
TrEMBLA0A078FX060.0A0A078FX06_BRANA; BnaC09g40650D protein
STRINGBo9g161400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34650.10.0homeodomain GLABROUS 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]