PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00094859001
Common NameGSBRNA2T00094859001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 374aa    MW: 42652.2 Da    PI: 9.8594
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00094859001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-16695198
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                         ffk l     + s+ l +p  f+++h +g +e + t +l++ +s  +W+vk+      ++  lt+GWkeF+ a++L++gD+vvF+ ++++ f
  GSBRNA2T00094859001  6 FFKPL--LPGFHSH-LKIPVAFFSKHiEGRNEHKNTAKLRSdTSEITWKVKI-----EDGLRLTEGWKEFALAHDLRVGDIVVFRQENDMAF 89
                         66666..5667777.9***********556667779999997888*******.....55678***********************6666777 PP

                         ..EEEEE- CS
                   B3 91 elvvkvfr 98
                           +v++f 
  GSBRNA2T00094859001 90 --HVTLFG 95
                         ..998875 PP
2B378.47.6e-25143229593
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           +++++l+ ++l++pk+fa+++g+++ +s +++l++e+g sW++ l+ +++ g++++t+GW++F++ ngL++g f++Fkl++r +++lv
  GSBRNA2T00094859001 143 NVTPSSLRYDMLYIPKSFARANGLET-RSGEIVLMNEKGTSWTLILKRKNSCGTMYITRGWRRFCRVNGLRAGSFFTFKLIQR-GGTLV 229
                          6789999***************9996.556****************98888888***************************96.44343 PP
3B357.82e-18276372199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ +++++  +++ l+lp +f+++h++++e+   +tl d++g +W+  l+ +k+s+++ l +G keF kan ++ g++++ kl+++ ++
  GSBRNA2T00094859001 276 FVTLTLKPYEVEKSTLYLPVQFTRRHSINEET--RMTLLDKNGVKWSTDLRSEKRSDKIRLVGGCKEFFKANCVEMGESIIVKLIWDGDT 363
                          667778899999999***********999655..7******************************************************* PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++v+k+++k
  GSBRNA2T00094859001 364 SCVLKFCSK 372
                          9*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.619397IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-203104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-233109IPR015300DNA-binding pseudobarrel domain
CDDcd100178.59E-17594No hitNo description
SMARTSM010196.4E-22697IPR003340B3 DNA binding domain
PfamPF023622.5E-111494IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-23136230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-23138232IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.482139236IPR003340B3 DNA binding domain
CDDcd100174.24E-24139231No hitNo description
SMARTSM010195.9E-32140236IPR003340B3 DNA binding domain
PfamPF023621.1E-23142229IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-17270372IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-17273365IPR015300DNA-binding pseudobarrel domain
CDDcd100175.60E-14275370No hitNo description
PROSITE profilePS5086311.096276373IPR003340B3 DNA binding domain
PfamPF023622.3E-17276372IPR003340B3 DNA binding domain
SMARTSM010195.2E-23276373IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MANQHFFKPL LPGFHSHLKI PVAFFSKHIE GRNEHKNTAK LRSDTSEITW KVKIEDGLRL  60
TEGWKEFALA HDLRVGDIVV FRQENDMAFH VTLFGPSCCE IQYGSCLDDK NKLVKIQSKK  120
KVKKNTKREV ETCTLDPSCY VVNVTPSSLR YDMLYIPKSF ARANGLETRS GEIVLMNEKG  180
TSWTLILKRK NSCGTMYITR GWRRFCRVNG LRAGSFFTFK LIQRGGTLVL RKSPSSTESE  240
DSSEGDEIEP LSTESKSFKK TSSMWKASSS PFQNLFVTLT LKPYEVEKST LYLPVQFTRR  300
HSINEETRMT LLDKNGVKWS TDLRSEKRSD KIRLVGGCKE FFKANCVEMG ESIIVKLIWD  360
GDTSCVLKFC SKV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.191400.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00094859001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140572.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotO230761e-116REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A078FVZ90.0A0A078FVZ9_BRANA; BnaC09g40640D protein
STRINGBra032078.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-108B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]