PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00094858001 | ||||||||
Common Name | GSBRNA2T00094858001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 235aa MW: 27151.9 Da PI: 9.1881 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41 | 3.4e-13 | 8 | 67 | 33 | 98 |
-SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 33 sktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + t +l++ s +W+vk+ + ++ r lt+GWkeF+ a++L++gD+vvF+ +++++f +v++f GSBRNA2T00094858001 8 KNTAKLRSeASEMTWKVKI--EDGR-R--LTEGWKEFALAHDLRVGDIVVFRQEKDMSF--HVTLFG 67 3578899945669******..4444.3..9**********************7777777..998886 PP | |||||||
2 | B3 | 50.3 | 4.4e-16 | 144 | 234 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ k++rl+lp f+++ g++ +++l l d++ +W l+ + +++r+ + +GWk+F kan Lk g+++ Fkl+++ ++++v+k GSBRNA2T00094858001 144 IRYWDVKNSRLYLPMAFTKDSGINV--KTKLALLDKNDVKWPTDLRSEYNGKRIRMIGGWKKFFKANFLKIGESIKFKLIWDGNTSCVLK 231 555667899*********9998774..459***************9999999999999************************99999999 PP EE- CS B3 96 vfr 98 +++ GSBRNA2T00094858001 232 LCS 234 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.1E-4 | 1 | 69 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.689 | 1 | 69 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.75E-11 | 3 | 66 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-20 | 7 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.0E-9 | 9 | 66 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.46E-15 | 18 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-15 | 135 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-18 | 136 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-15 | 139 | 234 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.563 | 139 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-15 | 139 | 234 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.06E-14 | 152 | 230 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEGRNDHKNT AKLRSEASEM TWKVKIEDGR RLTEGWKEFA LAHDLRVGDI VVFRQEKDMS 60 FHVTLFGPSC CEIQYGSGID QDNNLEKIQE KKNPKREEAE SSCFVANVRL ESDEESNHIS 120 SQERIDREDK KGLTSQSRFV TLTIRYWDVK NSRLYLPMAF TKDSGINVKT KLALLDKNDV 180 KWPTDLRSEY NGKRIRMIGG WKKFFKANFL KIGESIKFKL IWDGNTSCVL KLCS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.19140 | 9e-96 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00094858001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013743894.1 | 1e-172 | B3 domain-containing protein REM14-like isoform X1 | ||||
TrEMBL | A0A078FVD8 | 1e-173 | A0A078FVD8_BRANA; BnaC09g40630D protein | ||||
STRING | Bo4g154810.1 | 1e-167 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21465 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 1e-52 | B3 family protein |
Publications ? help Back to Top | |||
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