PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00094839001
Common NameGSBRNA2T00094839001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 379aa    MW: 42652.2 Da    PI: 7.2278
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00094839001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-16110161155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  GSBRNA2T00094839001 110 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 161
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.00153881IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-84377IPR016177DNA-binding domain
PROSITE profilePS510329.5854675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-74676IPR001471AP2/ERF domain
CDDcd000181.69E-24110169No hitNo description
SuperFamilySSF541717.19E-18110170IPR016177DNA-binding domain
PfamPF008472.2E-11110161IPR001471AP2/ERF domain
SMARTSM003802.0E-32111175IPR001471AP2/ERF domain
PROSITE profilePS5103218.65111169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-17111169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MKKYFKKKKN FQIAFYNYSL FIEFFKIKFT DEARYDLIQL LSNHAGGYDK EEKAARAYDL  60
AALKYWGTTT TTNFPMSEYE KEVEEMKHMT RQEYVASLRR KSSGFSRGAS IYRGVTRHHQ  120
HGRWQARIGR VAGNKDLYLG TFGTQEEAAE AYDIAAIKFR GLTAVTNFDM NRYNVKAILE  180
SPSLPIGSAA KRLKEANRPV PSMMMISNNV SESENSASGW QNAAVQHHQG VDLSLLHQHQ  240
ERYNGYYYNG GNLSSESARA CFKQEDDQHH FLSNTQSLMT NIDHQSSVSD DSVTVCGNVV  300
GYGGYQGFAA PVNCDAYAAS EFDYNARNHY YFAQQQQTQQ SPGGDFPAAM TNNVGSNMYY  360
HGEGGGEVAP TFTVWNDN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.108580.0microspore-derived embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00094839001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179040.0AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608410.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A078FV500.0A0A078FV50_BRANA; BnaC09g40510D protein
STRINGBo9g160240.10.0(Brassica oleracea)
STRINGBo9g160260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-178AP2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]