PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00094728001 | ||||||||
Common Name | GSBRNA2T00094728001, LOC106366054 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 216aa MW: 23018.8 Da PI: 9.8672 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.5 | 5.5e-39 | 11 | 175 | 3 | 118 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ s s +++ + + GSBRNA2T00094728001 11 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStV--SASLRGNSTTTScnl 98 79*************************************************************9999977731..222222212222345 PP TCP 89 ...............................................kaaksaakskksqksaasalnlak.esraka 118 + a++++ +++q++aa l +++ +++++a GSBRNA2T00094728001 99 sssldhkpllgvspfilgkrvradedtpsgfwavparqefgqvwsfaAGATQEMLLQQQQQQAA-GLFVHQqQQQQQA 175 5667788899999999999999999999999999999999999999655555555555555555.3444441333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.892 | 16 | 70 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.7E-35 | 16 | 172 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL 60 RQAEPSIIAA TGTGTTPASF STVSASLRGN STTTSCNLSS SLDHKPLLGV SPFILGKRVR 120 ADEDTPSGFW AVPARQEFGQ VWSFAAGATQ EMLLQQQQQQ AAGLFVHQQQ QQQQAAMGEA 180 SAARVGNYLP GHLNLLASLS SGAPGSGRGE DDDQR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.13957 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00094728001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013661059.2 | 1e-142 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 1e-103 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A078FVP8 | 1e-156 | A0A078FVP8_BRANA; BnaA09g05400D protein | ||||
STRING | Bo9g014260.1 | 1e-141 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-59 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106366054 |
Publications ? help Back to Top | |||
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