PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00094722001

Common Name

GSBRNA2T00094722001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 268aa MW: 28646.4 Da PI: 7.553

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00094722001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.1e-38	46	106	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s ntkfCyynny+ sqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ GSBRNA2T00094722001 46 HHQSLKCPRCNSLNTKFCYYNNYNHSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 106 57899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-32	37	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	48	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MQDIHDYSMT GGGGGGGGGG RTGRFFGGGG GGDRRMRVHQ NNILNHHQSL KCPRCNSLNT 60 KFCYYNNYNH SQPRHFCKNC RRYWTKGGVL RNVPVGGGCR KAKRSKSKQP PSSSSTSTAD 120 KPMAQDGEEK PCSSESSSLP AGAATAAAAK GVMGADMHNI KLYGNGIEWS TLLGQGSSDG 180 GVFEMGGFTA LSIDTTPFGF GGNTVQQQFE DRTAQVDPTM EFEPLDWGSG GGDQTLFDLT 240 STADHAYWSH QDQNDLTFHN SDSFSSF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.26788	1e-48	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00094722001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353138	1e-104	AK353138.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-G03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111960.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
Swissprot	Q8LDR0	1e-104	DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBL	A0A078FV41	0.0	A0A078FV41_BRANA; BnaA09g05460D protein
TrEMBL	A0A397XRG5	0.0	A0A397XRG5_BRACM; Uncharacterized protein
TrEMBL	M4F4F6	0.0	M4F4F6_BRARP; Uncharacterized protein
STRING	Bra035956.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	6e-92	OBF binding protein 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Xu P,Chen H,Ying L,Cai W AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana. Sci Rep, 2016. 6: p. 27705 [PMID:27297966] Ramirez-Parra E, et al. The transcription factor OBP4 controls root growth and promotes callus formation. New Phytol., 2017. 213(4): p. 1787-1801 [PMID:27859363] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701]