PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00094513001

Common Name

GSBRNA2T00094513001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 493aa MW: 54179.7 Da PI: 6.0701

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00094513001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.2	5.2e-31	279	337	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ GSBRNA2T00094513001 279 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 337 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.8E-34	263	339	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-28	271	339	IPR003657	WRKY domain
PROSITE profile	PS50811	29.838	273	339	IPR003657	WRKY domain
SMART	SM00774	8.1E-38	278	338	IPR003657	WRKY domain
Pfam	PF03106	7.5E-27	280	337	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MFRFPVSLGG QGDNLKQTQP SDEQHHRPIM DEVDFFRSEK RDDQNVITEE THRLHVKREN 60 SRVDDDNDRS MGINTGLNLL TANTGSDESL VDDGLSVDME EKRTKIENTQ LREELKKSNE 120 ENQRLKEMLS QTTNNFNSLQ MQLVAVMRQE EDHHHLATIE SKDKDTNRHE ASEMVPRQFI 180 DLGLPSAEVS SDERITVRSR SPPSLLEDSS SRQRAKRVLE IEESPENESN GWGNPSKVSK 240 HNASSSNGNG NAIDQSAADA TMRKARVSVR ARSEAPMLSD GCQWRKYGQK MAKGNPCPRA 300 YYRCTMAVGC PVRKQVQRCA EDRSILITTY EGNHNHPLPP AAMYMASTTT AAASMLLSGS 360 TMSNQDASAP FPTITLDLTE SASNVNGPTN NNPLMQFSQR SGFAELNQSG LPQMMGQALY 420 YNQQQSKFSG LHIPSQSLNA GESVNAAMAA NPNFAAALAA AITSIINGSS NHQNGSSNSS 480 NNNVTTSSGD RQ*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MFRFPVSLGG QGDNLKQTQP SDEQHHRPIM DEVDFFRSEK RDDQNVITEE THRLHVKREN  60
SRVDDDNDRS MGINTGLNLL TANTGSDESL VDDGLSVDME EKRTKIENTQ LREELKKSNE  120
ENQRLKEMLS QTTNNFNSLQ MQLVAVMRQE EDHHHLATIE SKDKDTNRHE ASEMVPRQFI  180
DLGLPSAEVS SDERITVRSR SPPSLLEDSS SRQRAKRVLE IEESPENESN GWGNPSKVSK  240
HNASSSNGNG NAIDQSAADA TMRKARVSVR ARSEAPMLSD GCQWRKYGQK MAKGNPCPRA  300
YYRCTMAVGC PVRKQVQRCA EDRSILITTY EGNHNHPLPP AAMYMASTTT AAASMLLSGS  360
TMSNQDASAP FPTITLDLTE SASNVNGPTN NNPLMQFSQR SGFAELNQSG LPQMMGQALY  420
YNQQQSKFSG LHIPSQSLNA GESVNAAMAA NPNFAAALAA AITSIINGSS NHQNGSSNSS  480
NNNVTTSSGD RQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	265	341	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00094513001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ384110	0.0	FJ384110.1 Brassica napus cultivar Westar WRKY transcription factor 42 (WRKY42) mRNA, WRKY42-2 allele, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013670285.1	0.0	WRKY transcription factor 42-like
Swissprot	Q9XEC3	0.0	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A078FUI4	0.0	A0A078FUI4_BRANA; BnaA09g20470D protein
STRING	Bra029491.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1057	28	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	0.0	WRKY family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]