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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GSBRNA2T00094475001 | ||||||||
| Common Name | GSBRNA2T00094475001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 734aa MW: 80511.1 Da PI: 5.9767 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.9 | 4e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t+ q++eLe++F+++++p+ ++r+eL++ l L+ qVk+WFqN+R+++k
GSBRNA2T00094475001 63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLCLEPLQVKFWFQNKRTQMK 118
688999***********************************************998 PP
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| 2 | START | 213 | 1.1e-66 | 254 | 473 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78
ela +a++elv++a+a++p+Wv+ + +n++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ + +
GSBRNA2T00094475001 254 ELAVAAMEELVRMAQAGDPLWVSTGnsmDLLNEEEYFRTFPRGIGpkplgLRTEASRESAVVIMNHINLVEILMDVN-QWSCVFSgivsR 342
57899******************9998999************999********************************.************ PP
EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
a tlev+s+g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds +++ + R +++pSg+li++++ng+
GSBRNA2T00094475001 343 ALTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGSWAVVDVSLDSLRPNL----ISRTRRRPSGCLIQELPNGY 428
****************************************************************96....7999**************** PP
EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
skvtw+eh+++++r++h ++++lv+sgla+gak+wv+tl+rqce+
GSBRNA2T00094475001 429 SKVTWIEHMEVDDRSVHTMYKPLVHSGLAFGAKRWVSTLERQCER 473
*******************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 6.4E-23 | 44 | 118 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.44E-18 | 49 | 120 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 16.422 | 60 | 120 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 1.5E-15 | 61 | 124 | IPR001356 | Homeobox domain |
| Pfam | PF00046 | 1.0E-16 | 63 | 118 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 4.60E-17 | 63 | 121 | No hit | No description |
| PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
| PROSITE profile | PS50848 | 44.647 | 245 | 476 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 2.75E-35 | 247 | 475 | No hit | No description |
| CDD | cd08875 | 6.76E-125 | 249 | 472 | No hit | No description |
| SMART | SM00234 | 1.5E-72 | 254 | 473 | IPR002913 | START domain |
| Pfam | PF01852 | 9.6E-56 | 255 | 473 | IPR002913 | START domain |
| Gene3D | G3DSA:3.30.530.20 | 4.3E-5 | 352 | 472 | IPR023393 | START-like domain |
| SuperFamily | SSF55961 | 8.24E-25 | 493 | 721 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009845 | Biological Process | seed germination | ||||
| GO:0009913 | Biological Process | epidermal cell differentiation | ||||
| GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
| GO:0048825 | Biological Process | cotyledon development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 734 aa Download sequence Send to blast |
MYHPSMFESH HMFDMTTKST SDNDLGITGS REDEFETKSG TEVTTDNPSG EELQDPNQRP 60 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLC LEPLQVKFWF QNKRTQMKAQ 120 HERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENVRLRE 180 EIDRISAIAA KYVGKPVGSS FAPLGIHGPS RSLELEVGNF GNQTTGFVGD MYGTGDILRS 240 VSIPSDTDKP IIVELAVAAM EELVRMAQAG DPLWVSTGNS MDLLNEEEYF RTFPRGIGPK 300 PLGLRTEASR ESAVVIMNHI NLVEILMDVN QWSCVFSGIV SRALTLEVLS TGVAGNYNGA 360 LQVMTAEFQV PSPLVPTREN YFVRYCKQHS DGSWAVVDVS LDSLRPNLIS RTRRRPSGCL 420 IQELPNGYSK VTWIEHMEVD DRSVHTMYKP LVHSGLAFGA KRWVSTLERQ CERLASSMAS 480 NIPASDLSVI TSPEGRKSML KLAERMVMSF CSGVGASTAH AWTTMSSTGS DDVRVMTRKS 540 MDDPGRPPGI VLSAATSFWI PVAPKRVFDF LRDENSRSEW DILSNGGMVQ EMAHIANGRE 600 PGNCVSLLRV NSGNSSQSNM LILQESCTDA SGSYVIYAPV DIVAMNVVLS GGDPDYVALL 660 PSGFAILPDV VSSSTTASGS CGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIKCTVERI 720 KAALACDVGG GAP* |
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | GSBRNA2T00094475001 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK352868 | 0.0 | AK352868.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-J22. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009114536.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
| Refseq | XP_009114537.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
| Refseq | XP_013661998.1 | 0.0 | homeobox-leucine zipper protein PROTODERMAL FACTOR 2 isoform X1 | ||||
| Refseq | XP_013661999.1 | 0.0 | homeobox-leucine zipper protein PROTODERMAL FACTOR 2 isoform X1 | ||||
| Refseq | XP_018510478.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
| Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
| TrEMBL | A0A078FUG0 | 0.0 | A0A078FUG0_BRANA; BnaA09g20170D protein | ||||
| STRING | Bra029527.1-P | 0.0 | (Brassica rapa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM491 | 28 | 149 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G04890.1 | 0.0 | protodermal factor 2 | ||||
| Publications ? help Back to Top | |||
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