PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00094351001 | ||||||||
Common Name | GSBRNA2T00094351001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 1043aa MW: 110812 Da PI: 6.0503 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.1e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F + GSBRNA2T00094351001 127 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPCQ-ELVAKDIHDNTWTFRHIFRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVR 215 99*****************************98888885.9************************************************4 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++l+++++r+ GSBRNA2T00094351001 216 --DGKGHLLLGIRRA 228 ..568889****997 PP | |||||||
2 | Auxin_resp | 117.7 | 9.8e-39 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m fete++ rr++Gtv+g+sdldpvrW+nS+Wr+L+ GSBRNA2T00094351001 253 AAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQ 335 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.27E-42 | 117 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-42 | 121 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.59E-20 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 4.4E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.182 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.8E-34 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.0E-9 | 913 | 1001 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.256 | 915 | 1008 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.32E-9 | 928 | 993 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1043 aa Download sequence Send to blast |
MKAPSSNGVS PNPLEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK 60 QTDFIPSYPN LPSKLICMLQ NVTLNADPET EEVYAQMTLQ PVNKYDRDAL LASDMGLKIN 120 RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR 180 HIFRGQPKRH LLTTGWSVFV STKRLFAGDS VLFVRDGKGH LLLGIRRANR QQPALSSSVI 240 SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI 300 FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT 360 PFYICPPPFF RPRFAGQPGM PDDGTDMESA LKRAMPWLDN GLEMKDPSST IFPGLSLVQW 420 MSMQQQNGGQ VPSSAGFFPS MVSPTAAMHN SLGGADDPSN NAPVTSAANY VVSTTAAAAV 480 VALLFEPSAT AITASATTTI ASASASASAA ATTTTITASA ATTTITAASA AATTIAAATP 540 STTASATPST TATATDSAAA ATTTAAVKNA ATAISYAPTQ FQLPQNQLYN GHQATQQHQA 600 QQTSMHHLQP QVVSGSIASS VIAPPRTVFT TNGTAAASWS CPGTQSATAE NSTVTGSTNI 660 PAESLGTTAF TVSAVAEVTT AATTTAAISF SRKLEFAFSV TPPTAAKPAV SAATFSLSRG 720 AKAYSGITDG GDAPSSSTSP STNNCQISSS TFLNRSQSGP AILIPDPAVD VSGSLVQDLY 780 SKSDMRLKHE LVSQQKPKAS LTDHQLEAQQ NFLSPNFGLD GDSRNSLFGG GGNVENGFVP 840 ETLLSRGYDS QKDLQNMLSN YGGVTNDIGT EMSTSAVRTQ SFGIPNVPAI SNDLAVNDAG 900 VLGGGLWPTQ TQRMRTYTKV QKRGSVGRSI DVNRYRGYDE LRHDLARMFG IEGQLEDPLT 960 SDWKLVYVDH ENDILLVGDD PWEEFVNCVQ SIKILSSAEV PQLSLDGNFA GLPATNQACS 1020 GGDNGNGWRG QYDDNSATSF NR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-167 | 21 | 356 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Act as a transcriptional activator of several tropic stimulus-induced (TSI) genes, including SAUR50. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Required for differential growth responses of aerial tissues. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF19. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF5. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:16371470, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00094351001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979469 | 0.0 | JN979469.1 Brassica rapa subsp. pekinensis auxin response factor 7-1 (ARF7-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022568032.1 | 0.0 | auxin response factor 7-like isoform X1 | ||||
Swissprot | P93022 | 0.0 | ARFG_ARATH; Auxin response factor 7 | ||||
TrEMBL | A0A078FQ45 | 0.0 | A0A078FQ45_BRANA; Auxin response factor | ||||
STRING | Bo9g151530.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20730.2 | 0.0 | ARF family protein |