PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00093932001
Common NameGSBRNA2T00093932001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 458aa    MW: 51679.9 Da    PI: 6.6434
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00093932001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.8e-15264323155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ ++++gr++A+++d  ++  g  +r ++++lg ++ +e+Aa+a++ a+ k++g
  GSBRNA2T00093932001 264 SQYRGVTKHRWTGRYEAHLWDnSCKkEGqsRRgRQVYLGGYDDEEKAARAYDLAAMKYWG 323
                          78*******************988886677557*************************98 PP
2AP247.15.8e-15366417155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSBRNA2T00093932001 366 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 417
                          57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.71E-17264333IPR016177DNA-binding domain
PfamPF008473.1E-11264323IPR001471AP2/ERF domain
CDDcd000184.08E-21264333No hitNo description
Gene3DG3DSA:3.30.730.107.7E-16265332IPR001471AP2/ERF domain
PROSITE profilePS5103219.006265331IPR001471AP2/ERF domain
SMARTSM003803.1E-29265337IPR001471AP2/ERF domain
PRINTSPR003677.5E-6266277IPR001471AP2/ERF domain
CDDcd000181.23E-25366426No hitNo description
SuperFamilySSF541711.44E-17366425IPR016177DNA-binding domain
PfamPF008478.7E-10366417IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18367425IPR001471AP2/ERF domain
PROSITE profilePS5103219.019367425IPR001471AP2/ERF domain
SMARTSM003802.1E-33367431IPR001471AP2/ERF domain
PRINTSPR003677.5E-6407427IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MGERETSRER KGEEMNKWLG FSLTPHLRIS DRVQEEDEEN YVVTNQQKAL MPLNSDGSPF  60
FTDPLTHHPH PVWQYDINLN HDDHHHHDEE VPKLENFFSN SHQIECPPIS GNNQTNVNCT  120
TMLNRLSPPG YLLYEQAVST PQYSNLDTNL SHDYGGSVSV FKSWLGQGTP TFPVSNTYVS  180
GEGSTSNTSN FSHEETDYNT SGSTLLLTLS HGAASDLINE LNVSVPVEEP VKVDEKRKSL  240
VGKSQAKEPV ETRKSVDSLG QRTSQYRGVT KHRWTGRYEA HLWDNSCKKE GQSRRGRQVY  300
LGGYDDEEKA ARAYDLAAMK YWGPTTHLNF PLSNYEKEME ELNNMTRQEF VAMLRRNSSG  360
FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGVNA  420
VTNFDICRYD VKRICSNSTI INSDQAKRSP SNSASGQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00093932001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746829.20.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A078IIR90.0A0A078IIR9_BRANA; BnaA02g16050D protein
STRINGBo2g076920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]