PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092647001
Common NameGSBRNA2T00092647001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 276aa    MW: 31467.8 Da    PI: 9.96
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092647001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.74.9e-312474151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+s
  GSBRNA2T00092647001 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYAS 74
                         79***********************************************86 PP

2K-box1132.9e-37122213899
                K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           ++ea+++++qqe++kL+++i+ +q+++Rh++Ge+L+sL++keL++Le +Lek+++++RskK+ell+++ie++qk+e elq++n++Lr+k
  GSBRNA2T00092647001 122 TVTEANTKYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKSELLVAEIEYMQKREMELQHDNMYLRAK 211
                          4899************************************************************************************** PP

                K-box  98 le 99 
                          +e
  GSBRNA2T00092647001 212 IE 213
                          98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.6411676IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-401675IPR002100Transcription factor, MADS-box
CDDcd002655.79E-401781No hitNo description
SuperFamilySSF554556.8E-311793IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-321838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003193.9E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-323853IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-325374IPR002100Transcription factor, MADS-box
PfamPF014864.3E-27126212IPR002487Transcription factor, K-box
PROSITE profilePS5129714.987128218IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDEGGSSHYA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VIFSTRGRLY EYASNSFYKI LLSRRPILCL SLNIIRVSSV KKNWGTIERY KKACSDAVNP  120
PTVTEANTKY YQQEASKLRR QIRDIQNSNR HIVGESLGSL NFKELKNLEG RLEKGISRVR  180
SKKSELLVAE IEYMQKREME LQHDNMYLRA KIEQGARLNP EQHGSGVIQG TAVYESGLSS  240
SHDQSQHYNR NYIPVNLLEP NQQFSGQDQP PLQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-211682167MEF2C
5f28_B3e-211682167MEF2C
5f28_C3e-211682167MEF2C
5f28_D3e-211682167MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092647001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9730860.0JQ973086.1 Brassica napus Shatterproof (SHP1c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573522.11e-177agamous-like MADS-box protein AGL1 isoform X1
SwissprotP293811e-164AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLA0A078IIQ90.0A0A078IIQ9_BRANA; BnaA09g55330D protein
STRINGBra007419.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33412350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.31e-157MIKC_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  3. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]