PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092568001
Common NameGSBRNA2T00092568001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 251aa    MW: 25876.9 Da    PI: 4.6275
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092568001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-1685134155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  GSBRNA2T00092568001  85 PVYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYSTPEMAAAAYDVAALALKG 134
                          68****9.55.6*********854...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.6E-1085134IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1886144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-2786144IPR001471AP2/ERF domain
PROSITE profilePS5103219.70486142IPR001471AP2/ERF domain
SMARTSM003802.8E-2886148IPR001471AP2/ERF domain
CDDcd000181.59E-1787144No hitNo description
PRINTSPR003671.9E-68798IPR001471AP2/ERF domain
PRINTSPR003671.9E-6124144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MTNPNSAFTE SKAISQASSS SVTIVSARTC GDSISSSAAC EKSCPLTTIT SATVSFAAAT  60
STSGSDNDTL MDTDAGLISR RKNHPVYRGI RCRSGKWVSE IREPKKTTRV WLGTYSTPEM  120
AAAAYDVAAL ALKGGEAVLN FPESIGSYPL PVSSSAAHIR TTAAKAAATV GAAAAAAVNA  180
AMKGGEKKEE KVCDGAGSSA VEFVDEEELL NMPGLLEDMA KGMMVAPPWM GCPPSDDSPE  240
DSDGESLWSY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-13841451275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092568001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894370.0AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112987.10.0PREDICTED: ethylene-responsive transcription factor ERF026-like
RefseqXP_013673463.10.0ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN92e-92ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A078IJF10.0A0A078IJF1_BRANA; BnaA09g10750D protein
STRINGBra027615.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.16e-42ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]