PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092563001
Common NameGSBRNA2T00092563001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 633aa    MW: 71199.1 Da    PI: 7.3446
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092563001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.81.2e-1282546241373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                          lv+lL+ c ea+++++ +++++l+ar  elasp+g +pm+Rl++y+ eALa r++r++++++++ pp+e +++   e   a +++++++P
  GSBRNA2T00092563001 254 LVNLLTGCLEAIRTRNIAAINHLIARTGELASPRGtTPMTRLISYYIEALALRVSRMWPHIFHIAPPREFERT--LEDDDAWRFLNQATP 341
                          6899*******************************99*********************************964..44446999******* PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          i+kf h taN+++l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p ++RiTgvg+    sk+el+etg+rL+ fAe++++pfef+
  GSBRNA2T00092563001 342 IPKFIHYTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRSNPPRHVRITGVGE----SKHELNETGDRLRGFAEAMNLPFEFH 427
                          ************************************************************....9************************* PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + v++rled++l++L+vk+gEa+aVn+v+q+h++l + ++ ++    ++ lv+s++P  vv++eqea+h+s+++ +r++++l+yysa+fd
  GSBRNA2T00092563001 428 P-VVDRLEDVRLWMLHVKEGEAVAVNCVMQIHKTLYDGAAFRN----FVGLVRSTNPVAVVIAEQEAEHDSAQLETRVCNSLKYYSAVFD 512
                          *.7********************************99999999....******************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrveee.. 354
                           +++ l+++s  r+k+E++l+grei+n+vaceg++r+erh  +++Wr+++e+ GF+++ +se+++ q ++llr+++  ++g ++ve +  
  GSBRNA2T00092563001 513 VMHTHLGADSLMRVKIEEVLFGREIRNIVACEGSHRQERHVGFGQWRRMMEQLGFRSLGVSEREVLQSRMLLRMYGdgDEGfFNVERSae 602
                          ***************************************************************************974455999994444 PP

                 GRAS 355 ...sgslvlgWkdrpLvsvSaW 373
                              g ++l W ++pL+++SaW
  GSBRNA2T00092563001 603 egdGGGVTLRWLEQPLYTISAW 624
                          45456666************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.794228597IPR005202Transcription factor GRAS
PfamPF035144.0E-126254624IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAATVSVHF PMNTQRLDLP CSSSFSRKEP IERKSGGCSL  60
KQSIKLPPLA TTRGNTEGFS WNNDNNIVKK KKSLKRFAEE NKVDKSCLSR VKRQRGGDDD  120
HNRGFWFEHL TAQNSSQALP FSLTCSSDDY EEKVWFAPSE VISQPLQSNN PNWANSVITT  180
ELAGLGDKDI ESSSRPAAVK EASGSSTSAS SDSRHRVPEP TNGSRNQYSH RGGNTEERTI  240
NNNHMNDSQR DFELVNLLTG CLEAIRTRNI AAINHLIART GELASPRGTT PMTRLISYYI  300
EALALRVSRM WPHIFHIAPP REFERTLEDD DAWRFLNQAT PIPKFIHYTA NEMLLRAFEG  360
KERVHIIDFD IKQGLQWPSF FQSLASRSNP PRHVRITGVG ESKHELNETG DRLRGFAEAM  420
NLPFEFHPVV DRLEDVRLWM LHVKEGEAVA VNCVMQIHKT LYDGAAFRNF VGLVRSTNPV  480
AVVIAEQEAE HDSAQLETRV CNSLKYYSAV FDVMHTHLGA DSLMRVKIEE VLFGREIRNI  540
VACEGSHRQE RHVGFGQWRR MMEQLGFRSL GVSEREVLQS RMLLRMYGDG DEGFFNVERS  600
AEEGDGGGVT LRWLEQPLYT ISAWGIGGSS SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6326162426378Protein SCARECROW
5b3h_A3e-6326162425377Protein SCARECROW
5b3h_D3e-6326162425377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.225740.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092563001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894370.0AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112977.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A078IIK20.0A0A078IIK2_BRANA; BnaA09g10790D protein
STRINGBra027620.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]