PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00092211001 | ||||||||
Common Name | GSBRNA2T00092211001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 558aa MW: 63649.5 Da PI: 6.9535 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.2 | 2.4e-21 | 110 | 206 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f kvl+ sd++k+g +vl k++a e+ + s++++ +d +g +W++k++ r++++r+++t+GW+eF k ++L +gD +vF + GSBRNA2T00092211001 110 FTKVLSASDTNKKGSFVLNKRHAIEClplLLT--PSQEVIAKDIHGHEWNFKHTLRGTPQRHLFTSGWNEFSKGKDLVVGDCFVFL--RG 195 89*************************86444..3559************************************************..34 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++e +v++++ GSBRNA2T00092211001 196 ENGESRVGIRK 206 78888999987 PP | |||||||
2 | Auxin_resp | 85.2 | 1.4e-28 | 233 | 312 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a +a++ k++F v+Y+Pr s+F v+++k+ + +++k+svG+Rf m+fe+ d+se+r++Gt+vgv+d+++ +W++S+WrsL+ GSBRNA2T00092211001 233 ALNAIKRKCMFVVFYKPRL--SQFLVNFDKFIDGVNRKFSVGSRFLMKFEGRDFSEIRYYGTIVGVKDFST-HWKDSEWRSLE 312 6799**************7..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-31 | 101 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.72E-25 | 107 | 207 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.51E-21 | 109 | 206 | No hit | No description |
PROSITE profile | PS50863 | 12.647 | 110 | 208 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.8E-17 | 110 | 208 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-18 | 110 | 206 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.4E-25 | 233 | 311 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.53E-7 | 445 | 521 | No hit | No description |
PROSITE profile | PS51745 | 19.216 | 446 | 528 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MATDQIMHVQ PESLATDGTN NYLYDQLWKL CAGPLFHLPK LVTSMNDELC QLKPIFDIPS 60 KICCNVFSIK LKVETTTDEI YAEISLLPDT SEVEIPTPRH ENNIQNINYF TKVLSASDTN 120 KKGSFVLNKR HAIECLPLLL TPSQEVIAKD IHGHEWNFKH TLRGTPQRHL FTSGWNEFSK 180 GKDLVVGDCF VFLRGENGES RVGIRKSAHH QQHNIPSPLI SKQSMYHGVV ATALNAIKRK 240 CMFVVFYKPR LSQFLVNFDK FIDGVNRKFS VGSRFLMKFE GRDFSEIRYY GTIVGVKDFS 300 THWKDSEWRS LEVQWDESAT IPRPDKVSPW EIEPLTHSSN ILKSVFLKNK RQSEIDDFGQ 360 EVGQTSIQSS MSYSFPSMSK PNYNEQMVQA LKETSTTTEA TSYRLFGVDL TVPAKTKDPV 420 QPTHSYKKSK ISKIFEEVKV DHIQTKTHTK VCMEGAVERT VDLTAFDGYN QLIHELERLF 480 DIKDKLHMHN QWKIVFINAD GDMMLLGDDP WPKFCNTAKE IFIYSESDAK IGNEDNKFAE 540 GGPMLTTTIL PPDVNNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-100 | 20 | 342 | 16 | 362 | Auxin response factor 1 |
4ldw_A | 1e-100 | 20 | 342 | 16 | 362 | Auxin response factor 1 |
4ldw_B | 1e-100 | 20 | 342 | 16 | 362 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00092211001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009101718.1 | 0.0 | PREDICTED: auxin response factor 20-like | ||||
Swissprot | Q9C7I9 | 0.0 | ARFT_ARATH; Auxin response factor 20 | ||||
TrEMBL | A0A078IDQ2 | 0.0 | A0A078IDQ2_BRANA; Auxin response factor | ||||
STRING | Bo7g067390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7653 | 6 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35240.1 | 0.0 | auxin response factor 20 |
Publications ? help Back to Top | |||
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