PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092147001
Common NameGSBRNA2T00092147001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 417aa    MW: 47453.1 Da    PI: 9.3658
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092147001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.87.2e-2226126198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f kvlt sd++++g ++l kk a e+     +++++ s+ ++ +d++  +W++k+++r++++r+++t+GWk+Fv+ + L +gD+vvF + 
  GSBRNA2T00092147001  26 FTKVLTASDSSTHGGFSLFKKDAIEClplldMSQQAPSQWIVAKDLHDHVWKFKHTFRGTPQRHLFTSGWKQFVRKKSLAVGDSVVFLR- 114
                          89*****************************667777889************************************************3. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                            +++e  +++++
  GSBRNA2T00092147001 115 -GENGESQIGIRK 126
                          .377777898886 PP
2Auxin_resp38.93.8e-14152217183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a +a++tk++F+v+Y+P++  s+F+v+++k+ +a+++k+  G+R              +sGt+v v+d  ++ W++S+Wr+L+
  GSBRNA2T00092147001 152 ALNAINTKCMFDVFYRPKS--SKFIVNCKKIIDAVNMKFNTGSR--------------YSGTIVKVED-LSIYWKDSEWRNLQ 217
                          6799*************96..9*************999999987..............68********.677*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-2919150IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-3619140IPR015300DNA-binding pseudobarrel domain
CDDcd100172.80E-2025126No hitNo description
SMARTSM010196.5E-1726128IPR003340B3 DNA binding domain
PROSITE profilePS5086311.27926128IPR003340B3 DNA binding domain
PfamPF023625.6E-1926126IPR003340B3 DNA binding domain
PfamPF065071.9E-11152217IPR010525Auxin response factor
PROSITE profilePS5174512.267315395IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
VSLSPCSPEF EVSIPNGNNE QNINYFTKVL TASDSSTHGG FSLFKKDAIE CLPLLDMSQQ  60
APSQWIVAKD LHDHVWKFKH TFRGTPQRHL FTSGWKQFVR KKSLAVGDSV VFLRGENGES  120
QIGIRKAAPQ QSNISSSVIS KESMHHGLVA AALNAINTKC MFDVFYRPKS SKFIVNCKKI  180
IDAVNMKFNT GSRYSGTIVK VEDLSIYWKD SEWRNLQVQW DEAATIPRPN KVSPWEIEPL  240
IRENKRQREI GLAMSKPDYN DQMVQSTKEN STTNASSSFR LFGVDLTAST KARDVLEPLE  300
SYQKKIQTKK IRFTTSSTKV HMEGVVRTVD LTDFDGYNHM IVELEKLFNI EGKLHMHSQW  360
KLTFKVHEGD MMLVGDDSWL NKIEDISKYM NAQVEELCKR VDKLTRLHYA SSKSMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A4e-795240106355Auxin response factor 1
4ldw_A4e-795240106355Auxin response factor 1
4ldw_B4e-795240106355Auxin response factor 1
4ldx_A5e-795240106355Auxin response factor 1
4ldx_B5e-795240106355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092147001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794880.0JN979488.1 Brassica rapa subsp. pekinensis auxin response factor 27 (ARF27) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610137.10.0PREDICTED: auxin response factor 22-like
SwissprotQ9C8N91e-118ARFU_ARATH; Putative auxin response factor 21
SwissprotQ9LQE81e-118ARFN_ARATH; Putative auxin response factor 14
TrEMBLA0A078JQB30.0A0A078JQB3_BRANA; Auxin response factor (Fragment)
STRINGBo9g076090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34410.11e-115auxin response factor 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]