PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00091645001 | ||||||||
Common Name | GSBRNA2T00091645001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CO-like | ||||||||
Protein Properties | Length: 351aa MW: 38772 Da PI: 5.6687 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.4 | 2.2e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ GSBRNA2T00091645001 4 MCDFCNEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 6*****************************65677777776 PP | |||||||
2 | zf-B_box | 28 | 4.5e-09 | 46 | 89 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 +C++++ ++++ C d ++ lC++C ++H++ H+++++ GSBRNA2T00091645001 46 LICERCNAQPASVRCSDERVSLCQNCDWSGHNNdatsqHKRQSI 89 68*****************************9999999998875 PP | |||||||
3 | CCT | 58.9 | 1.8e-20 | 293 | 336 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a+lRYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ GSBRNA2T00091645001 293 RNNAVLRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 336 99***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.712 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.54E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 5.9E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.727 | 43 | 89 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.5E-5 | 46 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.57E-6 | 47 | 89 | No hit | No description |
SMART | SM00336 | 0.27 | 48 | 89 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.1E-15 | 293 | 335 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.991 | 293 | 335 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MGYMCDFCNE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC 60 SDERVSLCQN CDWSGHNNDA TSQHKRQSIN CYSGCPSSEE LASIWSFCLD LNFSSAGQSA 120 CEQEMGLMTI DEGTGEDKPG VQNVNLDQPG TSSALAKDIG VSEDDFCGNL MMDEVDLAFE 180 KYDELFGTAY NSSKDLFEHG GIGSLFEKHE GSKAMQQPAG SNAASEDSFM TCRTEPIICF 240 SSQPAHSNIS FSVVMGDSNA GDFQDCGASS MQKLSREITS QEETNASSHA TTRNNAVLRY 300 KEKKKARKFD KRVRYVSRKE RADVRRRVKG RFVKSGEAYD YDPMSPARSY * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00091645001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022569726.1 | 0.0 | zinc finger protein CONSTANS-LIKE 10-like | ||||
Refseq | XP_022569727.1 | 0.0 | zinc finger protein CONSTANS-LIKE 10-like | ||||
Swissprot | Q9LUA9 | 0.0 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A078IHY6 | 0.0 | A0A078IHY6_BRANA; BnaA02g30040D protein | ||||
TrEMBL | A0A398AF85 | 0.0 | A0A398AF85_BRACM; Uncharacterized protein | ||||
STRING | Bra020709.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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