PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00091530001 | ||||||||
Common Name | GSBRNA2T00091530001, LOC106348851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 319aa MW: 34622.4 Da PI: 8.6404 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.1 | 2.6e-15 | 158 | 212 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L eN+ L k l +++ + GSBRNA2T00091530001 158 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSNLMKGLTDVTQTFNE 212 79****************************************9998887777655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.9E-17 | 155 | 219 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.909 | 157 | 220 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.19E-12 | 158 | 209 | No hit | No description |
Pfam | PF00170 | 4.6E-13 | 158 | 207 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.3E-12 | 159 | 208 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 162 | 177 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 4.1E-14 | 226 | 276 | IPR020983 | Basic leucine-zipper, C-terminal |
Pfam | PF12498 | 8.3E-6 | 284 | 313 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MEKVFSVEET SCNNHLWSEP AKESDGTSGM NRSDSEWAFH RSIQKSSAGE DATAHGASDS 60 GPSSPVDSHE YREILKSKLN LACAAVAMKR GAFIKPQDTS GRSENGGAAY ASSASDQGSL 120 ASSTKATPVM SSTVTSGSEL SCDDEEADGE TNMHPTNVKR VKRMLSNRES ARRSRRRKQA 180 HLSELETQVS QLRVENSNLM KGLTDVTQTF NEASVENRVL KANLETLRAK VKMAEETVKR 240 ITGFNPMFHT MPPVSTVSNP SETSNSLDTS SQVTTPEISS SSNKSKALIG CKMNRTESMR 300 RVASLEHLQK RIRSVGDK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 178 | RRSRRRKQ |
2 | 173 | 178 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.21781 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in silique valves, vasculature and funiculi. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, young leaves, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00091530001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013644119.1 | 0.0 | basic leucine zipper 63 isoform X1 | ||||
Swissprot | B9DGI8 | 1e-158 | BZP63_ARATH; Basic leucine zipper 63 | ||||
TrEMBL | A0A078ICP7 | 0.0 | A0A078ICP7_BRANA; BnaC07g27440D protein | ||||
STRING | Bo7g093030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6846 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.2 | 1e-156 | bZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106348851 |