PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00091319001 | ||||||||
Common Name | GSBRNA2T00091319001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 548aa MW: 62552.2 Da PI: 6.6142 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.9 | 2.9e-21 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f kvlt sd + +g ++l kk a e+ ++++ s++++ +d++ +W++k+++r++++r+++t+GWkeFvk + L +gD++vF GSBRNA2T00091319001 124 FTKVLTASDIGPHGDFILFKKDAIEClppldmsQLIP--SQEIVAKDLHDHVWKFKHTFRGTPKRHLFTSGWKEFVKGKSLAVGDSFVFL 211 89****************************9887776..458************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +++e +v+++++ GSBRNA2T00091319001 212 --RGENGESRVGIRKT 225 ..34788889*99986 PP | |||||||
2 | Auxin_resp | 77.9 | 2.6e-26 | 250 | 329 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a++a++tk++F+v+Y+P++ s+F+v+++k+++a+++k+ +Rf m+fe+ d++e+ +sGt+v ++d ++ W++S+Wr+L+ GSBRNA2T00091319001 250 ASNAIHTKCMFDVFYKPKS--SKFIVNCDKFLDAVNMKFNTSSRFTMKFEGHDFNEIIYSGTIVKMED-FSIYWKGSEWRNLQ 329 6799*************96..9**********************************************.567*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-36 | 116 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-28 | 119 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-20 | 122 | 224 | No hit | No description |
SMART | SM01019 | 3.6E-19 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-18 | 124 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.956 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.3E-25 | 250 | 329 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.706 | 468 | 547 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.09E-9 | 470 | 542 | No hit | No description |
Pfam | PF02309 | 2.3E-6 | 509 | 542 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MANNQTMNAQ PKFRGTEGVN RYLYDQLWKL CAGPLFDLPK IGEEVYYFPQ GNIEQLVASA 60 NDNLCQLKPI FDISSRIHCN VISIKLKVET NTDEVYAKVS LLPCSPEVEI TFPNDNNEQN 120 IKYFTKVLTA SDIGPHGDFI LFKKDAIECL PPLDMSQLIP SQEIVAKDLH DHVWKFKHTF 180 RGTPKRHLFT SGWKEFVKGK SLAVGDSFVF LRGENGESRV GIRKTSHQQS DMSSSVISKE 240 SMHHGFIASA SNAIHTKCMF DVFYKPKSSK FIVNCDKFLD AVNMKFNTSS RFTMKFEGHD 300 FNEIIYSGTI VKMEDFSIYW KGSEWRNLQV QWDEAATIPR PNKVSLWEIE PLIPSSNILK 360 SVIQNNKRQR EINEFVQICY AGPIISKPDY NDQMVQSTKE NSTTNASSSF RLFGVDLTAS 420 SKARDVLEPL ESYQKNKTSE IFEEENLDQT QAVTSLTEIQ RKELSFTTSS TKVHMEGVTR 480 TVDLTVFDGY NHMIVELEKL FNIEGKLHMH SQWKLTFKDH EGDMMLVGDD PWPKFCNIVK 540 EIVISSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-114 | 23 | 352 | 19 | 355 | Auxin response factor 1 |
4ldw_A | 1e-114 | 23 | 352 | 19 | 355 | Auxin response factor 1 |
4ldw_B | 1e-114 | 23 | 352 | 19 | 355 | Auxin response factor 1 |
4ldx_A | 1e-114 | 23 | 352 | 19 | 355 | Auxin response factor 1 |
4ldx_B | 1e-114 | 23 | 352 | 19 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00091319001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979488 | 0.0 | JN979488.1 Brassica rapa subsp. pekinensis auxin response factor 27 (ARF27) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018514851.1 | 0.0 | PREDICTED: putative auxin response factor 21 | ||||
Swissprot | Q9C8N9 | 0.0 | ARFU_ARATH; Putative auxin response factor 21 | ||||
TrEMBL | A0A078IHK6 | 0.0 | A0A078IHK6_BRANA; Auxin response factor | ||||
STRING | Bra034234.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7653 | 6 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34410.1 | 0.0 | auxin response factor 21 |
Publications ? help Back to Top | |||
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