PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00091205001
Common NameGSBRNA2T00091205001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 366aa    MW: 39380.4 Da    PI: 6.6129
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00091205001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.46.5e-23249311163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          eke+kre+rkq+NRe+ArrsR+RK+ae+eeL  kv++L aeN++L+++l +l++e++kl+ e+
  GSBRNA2T00091205001 249 EKEVKREKRKQSNRESARRSRLRKQAETEELSVKVDALVAENMTLRSKLGQLNDESEKLRLEN 311
                          89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.7E-25198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.6E-13133227No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-16245308No hitNo description
PfamPF001701.0E-21249311IPR004827Basic-leucine zipper domain
SMARTSM003388.5E-20249313IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76251314IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-10252308No hitNo description
CDDcd147021.39E-20254303No hitNo description
PROSITE patternPS000360256271IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGSNEEGKTT QSDKPAQVQA PPPPPEQSNV HVYHHDWAAM QAYYGPRVAI TPQYYNSNGH  60
AAPPPPYIWG SPSPMMAPYG TPYPPFCPPG GVYAHPALQM GSQPQGPASQ ATPVVATPLN  120
LEAHPANSSG NTDQGFMTKL KEFDGLAMSI SNNKSGSGEH SSEPKNSQSS ENDDSSNGSD  180
GNTTGGEQSR KKRSREGSPN NDGKPSSQIV PLLRDESEKH AVTMGTPVMP TAMDFPQPFP  240
GAPHEVWNEK EVKREKRKQS NRESARRSRL RKQAETEELS VKVDALVAEN MTLRSKLGQL  300
NDESEKLRLE NQALLDQLKA QATGKTENLI SGVDKNNSVS GTSSSKNAEQ QLLNVSLRTD  360
SVAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265271RRSRLRK
2265272RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.21160.0root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves. {ECO:0000269|PubMed:1373374}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00091205001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX839200.0X83920.1 B.napus mRNA for G-Box binding factor 2A.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303121.10.0G-box-binding factor 2
SwissprotP427751e-171GBF2_ARATH; G-box-binding factor 2
TrEMBLA0A078IEP60.0A0A078IEP6_BRANA; BnaA09g00170D protein
STRINGBra037382.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-134G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]