PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00091138001
Common NameGSBRNA2T00091138001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 404aa    MW: 46375.9 Da    PI: 10.0546
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00091138001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.61.2e-14119166956
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          + q+++Le+ Fe  +++  e++ +L k lgL+ rq+ +WFqNr+a+ k
  GSBRNA2T00091138001 119 TGQVRALEKIFELGNKLESERKMQLGKALGLQPRQIANWFQNRKARLK 166
                          569*******************************************98 PP
2HD-ZIP_I/II103.12.4e-33120200989
          HD-ZIP_I/II   9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           qv++LE+ Fe  +kLe+erK++l ++Lglqprq+a WFqnr+AR ktkqlE+dy++Lk+++d lk++n++L +++++L++
  GSBRNA2T00091138001 120 GQVRALEKIFELGNKLESERKMQLGKALGLQPRQIANWFQNRKARLKTKQLERDYDTLKKQFDVLKSDNDSLLAHNKKLHD 200
                          6******************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.102.8E-1347104IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.1E-95189IPR001680WD40 repeat
SuperFamilySSF509782.38E-1252104IPR017986WD40-repeat-containing domain
PfamPF004002.2E-65488IPR001680WD40 repeat
PROSITE profilePS5029412.135898IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.0825890IPR001680WD40 repeat
SuperFamilySSF466895.13E-15105170IPR009057Homeodomain-like
PROSITE profilePS5007114.236108168IPR001356Homeobox domain
SMARTSM003894.6E-11112172IPR001356Homeobox domain
PfamPF000465.5E-12119166IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-15120175IPR009057Homeodomain-like
CDDcd000864.30E-11121169No hitNo description
PfamPF021837.6E-13168199IPR003106Leucine zipper, homeobox-associated
SuperFamilySSF560593.18E-9247364No hitNo description
Gene3DG3DSA:3.30.1490.207.9E-6294330IPR013815ATP-grasp fold, subdomain 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MIFIIPKKLK AGNGVDFETA NGRHNFKNKK FSDPATVTKW KDERMKAFYT EETPFQVLHG  60
HTGDVLDLAW SDSNLLLSAS KDKTVRLWRV GCDECLHIFH HNNYRGGGNY MINRSMTFTG  120
QVRALEKIFE LGNKLESERK MQLGKALGLQ PRQIANWFQN RKARLKTKQL ERDYDTLKKQ  180
FDVLKSDNDS LLAHNKKLHD GFHRCQSSNL GVVGTDGAAR NIFFVGSIAF QDVTHKVSAL  240
KVFPNRGDMA RLKEIQEAVL QMSAPKALRN ELIHKLRSER MSYHGDESSW NRSWVAIKKL  300
WASKWNVRAY VSRKLELTHD DVCMSVLVQE SCGDYAFVIH RNNPVIGDPS EIHTRDCEGF  360
GRDLGWRISR TRNELYHQEN KPQLANREKQ KTDSVCMLTP VSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00091138001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325761e-135AC232576.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010I13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078FUP90.0A0A078FUP9_BRANA; BnaA08g02400D protein
STRINGBo3g087040.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.13e-45homeobox 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]