PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00091069001

Common Name

GSBRNA2T00091069001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ARR-B

Protein Properties

Length: 441aa MW: 50273.8 Da PI: 5.4224

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00091069001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	67.6	2.1e-21	242	299	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 +pr+ Wt +L ++F+ea++ GG++kA Pk +l++ m+++gLt+++v SHLQkYRl GSBRNA2T00091069001 242 RPRISWTGDLQQKFLEAIDIVGGPKKASPKVLLKClhdMNIEGLTRNNVSSHLQKYRL 299 59**************************998765559****************8 PP
2	Response_reg	54.4	7.1e-19	36	141	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vd + + + +++++e+ y +v++ +d+eea++ l +++++++++ D mpg++Gl++l i ++ +lp++++++ ++ e + + GSBRNA2T00091069001 36 VLVVDANLSTLLDMKEIMERCAY-HVTAYADAEEAIAFLtkCKHEINIVIWDYHMPGINGLQALAIIGSKM-DLPVVIMSGDDQTESVMN 123 899999999************.***********666677******************6654.8************* PP HHHTTESEEEESS--HHHH CS Response_reg 89 alkaGakdflsKpfdpeel 107 a+ Ga +++Kp+ +e + GSBRNA2T00091069001 124 AMVHGACHCVMKPVRKE-I 141 ***********7655.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	4.41E-27	32	157	IPR011006	CheY-like superfamily
SMART	SM00448	4.1E-15	34	145	IPR001789	Signal transduction response regulator, receiver domain
Gene3D	G3DSA:3.40.50.2300	2.1E-29	34	186	No hit	No description
PROSITE profile	PS50110	33.544	35	150	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	7.4E-16	36	142	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.55E-15	37	145	No hit	No description
SuperFamily	SSF46689	2.87E-11	240	302	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-19	241	303	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-17	243	299	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MSIAHITEDG DKALFLQQET SEINSPLNEF PPSTNVLVVD ANLSTLLDMK EIMERCAYHV 60 TAYADAEEAI AFLTKCKHEI NIVIWDYHMP GINGLQALAI IGSKMDLPVV IMSGDDQTES 120 VMNAMVHGAC HCVMKPVRKE IIATIWQHIV RKRMMSKPGL VPPVKDDSVT VDQDDSEQSI 180 DKMIEEKATN KRTMICIEET QPMQSHLVKS NGSDQDDDDS RSVRNYNYEQ SIDKKKERYL 240 KRPRISWTGD LQQKFLEAID IVGGPKKASP KVLLKCLHDM NIEGLTRNNV SSHLQKYRLS 300 LEENKIPQQF PETGWSSLSR PSPFLGMNNG FIAPTSLRNW PAVYPVQDNQ YQNGYLAINN 360 NQFVTNNMPG FPYSENDHHL QQQHQQRQYQ LSNHVMNYMM RNEPQQAYNS IGLTDLEPNI 420 YPSLPYDPNE FLFDGYNFSN *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MSIAHITEDG DKALFLQQET SEINSPLNEF PPSTNVLVVD ANLSTLLDMK EIMERCAYHV  60
TAYADAEEAI AFLTKCKHEI NIVIWDYHMP GINGLQALAI IGSKMDLPVV IMSGDDQTES  120
VMNAMVHGAC HCVMKPVRKE IIATIWQHIV RKRMMSKPGL VPPVKDDSVT VDQDDSEQSI  180
DKMIEEKATN KRTMICIEET QPMQSHLVKS NGSDQDDDDS RSVRNYNYEQ SIDKKKERYL  240
KRPRISWTGD LQQKFLEAID IVGGPKKASP KVLLKCLHDM NIEGLTRNNV SSHLQKYRLS  300
LEENKIPQQF PETGWSSLSR PSPFLGMNNG FIAPTSLRNW PAVYPVQDNQ YQNGYLAINN  360
NQFVTNNMPG FPYSENDHHL QQQHQQRQYQ LSNHVMNYMM RNEPQQAYNS IGLTDLEPNI  420
YPSLPYDPNE FLFDGYNFSN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00091069001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013731119.1	0.0	putative two-component response regulator ARR19
Refseq	XP_013731120.1	0.0	putative two-component response regulator ARR19
Refseq	XP_013731121.1	0.0	putative two-component response regulator ARR19
TrEMBL	A0A078FUH1	0.0	A0A078FUH1_BRANA; BnaA08g02850D protein
STRING	Bra014172.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13137	16	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49190.1	6e-74	response regulator 19

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]