PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00090670001 | ||||||||
Common Name | GSBRNA2T00090670001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 26385.4 Da PI: 4.6256 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.5 | 4e-17 | 68 | 121 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+ ql Lee Fe+++ + +++ LA+klgL+ +qV vWFqNrRa+ k GSBRNA2T00090670001 68 KKRKLTPIQLCLLEESFEEDKRLEPDRKLWLAEKLGLQPTQVAVWFQNRRARFK 121 56799***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 111.7 | 4.9e-36 | 68 | 158 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkr+l+ q+ lLEesFee+++Lep+rK la++Lglqp qvavWFqnrRAR+kt+qlE d+++Lk++y +lk++++ L +++++L++++ GSBRNA2T00090670001 68 KKRKLTPIQLCLLEESFEEDKRLEPDRKLWLAEKLGLQPTQVAVWFQNRRARFKTRQLELDCDSLKASYAKLKTDRDILFRQNQALENKV 157 9*************************************************************************************9987 PP HD-ZIP_I/II 92 k 92 + GSBRNA2T00090670001 158 A 158 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.1E-18 | 49 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.293 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-17 | 66 | 127 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.69E-15 | 68 | 124 | No hit | No description |
Pfam | PF00046 | 1.8E-14 | 68 | 121 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 70 | 127 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.6E-5 | 94 | 103 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.6E-5 | 103 | 119 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.6E-13 | 124 | 165 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MENSNIDSEV FSWFQNQNQN HCLKFHSSCF PPTSQSALYG SSSMSNTETN TVDEEDVCES 60 NKMRETTKKR KLTPIQLCLL EESFEEDKRL EPDRKLWLAE KLGLQPTQVA VWFQNRRARF 120 KTRQLELDCD SLKASYAKLK TDRDILFRQN QALENKVALL KEKLQFQEKL ETQSMEAEKL 180 GEEGSSVKSD NTQYTEEEEG LGSNQYSFPE LAALGFYYDP TMSASNLGL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in flowers and siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00090670001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC000348 | 1e-100 | AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 1e-100 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115435.1 | 1e-168 | PREDICTED: homeobox-leucine zipper protein ATHB-54 | ||||
Swissprot | P0CJ65 | 1e-131 | ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54 | ||||
TrEMBL | A0A078FTF5 | 1e-168 | A0A078FTF5_BRANA; BnaA09g29480D protein | ||||
STRING | Bo5g041500.1 | 1e-153 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15908 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27045.1 | 1e-123 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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