PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00090431001
Common NameGSBRNA2T00090431001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 199aa    MW: 22096.5 Da    PI: 4.8641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00090431001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.58.9e-109402655
                  AP2 26 g.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                         + k+ k+++lg+f+taeeAa a++ a++++ g
  GSBRNA2T00090431001  9 KrKQeKKHWLGTFDTAEEAALAYDVAARSISG 40
                         24447**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.799148IPR001471AP2/ERF domain
SMARTSM003801.6E-7554IPR001471AP2/ERF domain
CDDcd000183.47E-14747No hitNo description
PfamPF008473.6E-6839IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-111048IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-141147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MLKSRNMGKR KQEKKHWLGT FDTAEEAALA YDVAARSISG SLAKTNFFYT DNISLQPQPQ  60
QFLQSSSDKA FFANPVASLE PNMSLGSSSF CFQQENNHFL SPNLTNSSSH YCHDDDHVGK  120
IKEISLPSLP NDMSSSLFSR QDKREEDGNA DKMKLGSVLT DEAHSFEYDF LLTGMPLSLL  180
SDYNEDLPQI MGSSSSFI*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00090431001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601068.11e-127PREDICTED: ethylene-responsive transcription factor ERF088
SwissprotQ3E7032e-56ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A078FT871e-144A0A078FT87_BRANA; BnaC08g40860D protein
STRINGBo8g107890.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.15e-45ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]