PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00090269001

Common Name

GSBRNA2T00090269001, LOC106448440

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 152aa MW: 17836 Da PI: 5.4221

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00090269001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.6	6.4e-09	12	52	10	50
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +NRe+A rs ++K eLe+kv++Le++ + L el+ GSBRNA2T00090269001 12 TLSNRESAARSKAKKALHESELEDKVETLETQIDILTAELK 52 579********************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.2E-8	3	52	No hit	No description
SMART	SM00338	6.6E-7	3	67	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.25E-8	7	55	No hit	No description
Pfam	PF07716	6.3E-7	14	52	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MAESDPKHLK ITLSNRESAA RSKAKKALHE SELEDKVETL ETQIDILTAE LKLEKRGRMT 60 ADDECVQFRI RLHAGEAHAR LREDLIQQLN GEVRRLIEEA SVQREEMSRL REEVSEYRRR 120 ESERMNANML DQLNINQQFQ EKPQQTNYNF E*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00090269001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745779.1	1e-105	transcription factor RF2b
Refseq	XP_013746902.1	1e-105	transcription factor VIP1-like
Refseq	XP_022574550.1	1e-105	transcription factor RF2b-like
TrEMBL	A0A078FSR9	1e-104	A0A078FSR9_BRANA; BnaA04g12040D protein
STRING	Bra030310.1-P	1e-104	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM30676	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	7e-15	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	106448440

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]