PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00090266001 | ||||||||
Common Name | GSBRNA2T00090266001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 287aa MW: 31946.2 Da PI: 9.0508 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 65.7 | 2e-20 | 31 | 109 | 15 | 95 |
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasal 95 e++++l +++++ms++aerda+++ern+a+s+k +a+a+rd a+lqrdkalaer+kal+erdn+++al+++ensl++al GSBRNA2T00090266001 31 EQHNALV--MNKKIMSILAERDAAVHERNQAVSAKLEALAARDQALLQRDKALAERDKALIERDNAFAALQHHENSLNFAL 109 2556666..99****************************************************************998655 PP | |||||||
2 | GAGA_bind | 244.3 | 8.3e-75 | 142 | 286 | 154 | 301 |
GAGA_bind 154 qrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243 ++ k++ke+k k kk +e+ + v++++ ++ k+++++ ++ln v++De t+PvPvC+CtG+ +qCYkWGnGGWqS+CCttt+S yP GSBRNA2T00090266001 142 KEIKRKKENKP-KGKKVGEDLNLLVAAPG--KKCKKDWDTNHFGLNLVTFDEKTMPVPVCTCTGSAHQCYKWGNGGWQSSCCTTTLSLYP 228 23333333333.34455777777788888..57********************************************************* PP GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 LP+++++r++R++grKmS+++f++lL++LaaeGydls vDLkd+WA+HGtn+++ti+ GSBRNA2T00090266001 229 LPQKPNKRHSRVGGRKMSGNVFSRLLSHLAAEGYDLSSRVDLKDYWARHGTNRYITIK 286 *********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 4.4E-129 | 1 | 286 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 7.6E-88 | 18 | 286 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MENGGQYANG SDYLKGAHSM WNMLPHHQIK EQHNALVMNK KIMSILAERD AAVHERNQAV 60 SAKLEALAAR DQALLQRDKA LAERDKALIE RDNAFAALQH HENSLNFALS GGKRCQGADD 120 DDDDVLFTID DLCPTTSTNP TKEIKRKKEN KPKGKKVGED LNLLVAAPGK KCKKDWDTNH 180 FGLNLVTFDE KTMPVPVCTC TGSAHQCYKW GNGGWQSSCC TTTLSLYPLP QKPNKRHSRV 240 GGRKMSGNVF SRLLSHLAAE GYDLSSRVDL KDYWARHGTN RYITIK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14579 | 1e-139 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00090266001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140266.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4 | ||||
Refseq | XP_013743517.1 | 0.0 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_018514043.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4 | ||||
Swissprot | Q8S8C6 | 1e-157 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A078FN78 | 0.0 | A0A078FN78_BRANA; BnaA04g12060D protein | ||||
STRING | Bra030308.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4090 | 26 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 1e-143 | basic pentacysteine 4 |
Publications ? help Back to Top | |||
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