PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00090240001
Common NameGSBRNA2T00090240001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 524aa    MW: 58414.8 Da    PI: 6.9655
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00090240001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.9e-113213674195
                          TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3  41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           s + Wev        ++ +ltkGWkeF +a++L+ gD+v+Fk++g++ f  +v+
  GSBRNA2T00090240001 321 ASDQIWEVIR------EGRTLTKGWKEFTEAHDLRIGDIVIFKHEGDMVF--HVT 367
                          4444555444......3346***********************9999988..666 PP
2B363.73e-20404497498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          +++++ + k + + lp + + ++g  +++ k+++l +++g+sW+ ++ ++ ++g+y++++GW++F+++n+   gD +vF ++g+ +++++
  GSBRNA2T00090240001 404 AEVTPTNQKDDKMFLPVEAM-RCGALNQQCKEVKLVNKEGKSWTARFGFSESDGAYYISRGWRKFCRDNRCTNGDLFVFNVVGDGTTTPL 492
                          5678999999*********9.7755556779*****************************************************9999*9 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          + v+ 
  GSBRNA2T00090240001 493 LCVCP 497
                          99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511267.46E-81661IPR011050Pectin lyase fold/virulence factor
Gene3DG3DSA:2.160.20.102.3E-920107IPR012334Pectin lyase fold
SMARTSM010195.6E-9284372IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-16312379IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.785317372IPR003340B3 DNA binding domain
CDDcd100171.15E-9320369No hitNo description
SuperFamilySSF1019363.73E-13320378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16400493IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-16401493IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.366401499IPR003340B3 DNA binding domain
CDDcd100171.95E-14401496No hitNo description
SMARTSM010193.2E-17402499IPR003340B3 DNA binding domain
PfamPF023623.7E-18404497IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MASSSSSSSS SIDFSTAILI RVDQSGKGDF NKIQEAIESI PPNLNNSQLY FIWVKPGVYS  60
DRFGKKQTLN TAHARFVDKT DNVIRGVPAA PTVVTGNGQD ISAHPDKHVL DGNANTIINI  120
IQNISEYSTP PSSPQNIQVG NKTPSIEGVA KPGFATPDPA TDCGAMSAHS QNHSRHTDNI  180
IPLEDVNTVP PHFIETPSFS LGLTQEEHIR SAEPLTRQKV ADLTTLSDIN VGDNIAYPQS  240
LRKSKRQKTL PPALLHDYLC GPHIDSRLHR PRESVFVCYE RREIERKINV LSRKLSVNVS  300
YSSYVGLRAE INKPWKLRSD ASDQIWEVIR EGRTLTKGWK EFTEAHDLRI GDIVIFKHEG  360
DMVFHVTPFG PSCCEIQYTH PHIVKEEADA DDAPTFSYDY CFLAEVTPTN QKDDKMFLPV  420
EAMRCGALNQ QCKEVKLVNK EGKSWTARFG FSESDGAYYI SRGWRKFCRD NRCTNGDLFV  480
FNVVGDGTTT PLLCVCPERK ECTELLIKHF SRIDGIIAST SRN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.44452e-80leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00090240001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553381e-179AC155338.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH138P04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078FN570.0A0A078FN57_BRANA; BnaA04g12310D protein
STRINGBra030287.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-43B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]