PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00089847001 | ||||||||
Common Name | GSBRNA2T00089847001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 178aa MW: 19599.3 Da PI: 9.8834 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.5 | 3e-38 | 61 | 119 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+++cprC+s+ tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grr++k GSBRNA2T00089847001 61 PDKIIACPRCKSMATKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRRSKP 119 68999***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-28 | 60 | 118 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.0E-31 | 63 | 118 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.913 | 65 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 67 | 103 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MATKDSPGIK LFGKTITFNA NNNNIIQTIK KEEGQEQQPE LQTKIAVRSP SSSDLMAEKR 60 PDKIIACPRC KSMATKFCYF NNYNVNQPRH FCKGCQRYWT AGGALRNVPV GAGRRRSKPP 120 GRAGGFSELL GAATGAVDQV ELDALLVEEW RAGASHGVFR HDYSVKRLRC YTDGQSC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.12525 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269|PubMed:19619493}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00089847001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013651530.1 | 1e-131 | dof zinc finger protein DOF1.5-like | ||||
Swissprot | P68350 | 2e-99 | DOF15_ARATH; Dof zinc finger protein DOF1.5 | ||||
TrEMBL | A0A078FS21 | 1e-131 | A0A078FS21_BRANA; BnaA07g08180D protein | ||||
TrEMBL | A0A397YKR4 | 1e-131 | A0A397YKR4_BRACM; Uncharacterized protein | ||||
STRING | Bo7g045730.1 | 1e-128 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2809 | 26 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29160.1 | 1e-91 | Dof family protein |
Publications ? help Back to Top | |||
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