PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089803001
Common NameGSBRNA2T00089803001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 716aa    MW: 80182.5 Da    PI: 5.1793
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089803001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS48.91.2e-15369437169
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppset 69 
                          l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++t
  GSBRNA2T00089803001 369 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKT 437
                          5789***********************************************************998775 PP
2GRAS283.75.1e-8743571099373
                 GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                           ++I++ +++++++Hi+Df+is+G+QWpaL++ L+ Rp+gpp+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+n+ +a+++
  GSBRNA2T00089803001 435 KKTIMRLTANADTIHIVDFGISYGFQWPALIHRLSFRPGGPPKLRITGIELPQRGfrPAEGVHETGHRLARYCQRYKVPFEYNA-IAQKW 523
                          5799*************************************************99*****************************.7**** PP

                 GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                          e++++e+L++++gE ++Vn+ ++ ++llde+v ++s+rd+vLkl+++ +P v++ +    ++n++ F++rf eal +ysalfd+ ++kl+
  GSBRNA2T00089803001 524 ETIRVEDLKIEQGEFVVVNSLFRFKNLLDETVVVNSPRDAVLKLIRKANPSVFIQAVLSGSYNAPFFVTRFREALFHYSALFDMCDSKLA 613
                          ****************************************************************************************** PP

                 GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                          re+e r + E+e+ grei+nvvaceg+er+er e++++W++r+ +aGFk++pl+++ +++ kl +++ +++ + ++++ ++l++gWk+r 
  GSBRNA2T00089803001 614 REDEMRLMFEKEFYGREIMNVVACEGTERVERPESYKQWQARVIRAGFKQLPLEKELMQNLKLKIENGYDKNFDIDQNGNWLLQGWKGRI 703
                          *********************************************************************999****************** PP

                 GRAS 367 LvsvSaW 373
                          +++ S+W
  GSBRNA2T00089803001 704 VYASSVW 710
                          ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.654343691IPR005202Transcription factor GRAS
PfamPF035141.8E-84435710IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MGSYSGGSLD GFDFTSEFDN LPASNQTVDS SDGFYLDDPL LNFVSFDHSS APPPETYPQK  60
NVAAASGDRL ASPSDDSEFS DSVLKYISQV LMEEDMEEKP CMFHDALALQ AAEKSLYEAL  120
GEQYPSSVEH GASYPEKLAE DSPDGSFPSG GGFSDYASTT TSSDSHWSLD GLENNNRPSW  180
LQTPFPSNFV FQSTSRSTSV NSGGNTASFG SSMFKDNELA MQFKRGVDEA SKFLPKSSQL  240
FIDVDSYVPK NSRFDENTSE VFVKTEKKDD ADPPPPSSNR LTRKKKSHWR DEDEDLAEER  300
SNKQSAVYVE ETELSEMFDK ILLCGGTGQP VCITDQKFPT EAKTRGKKST ATTTNSNSSK  360
GSKKETADLR TLLVLCAQAV SVDDRRTANE MLRQIREHSS PLGNGSERLA HYFANSLEAR  420
LAGTGTQIYT ALSSKKTIMR LTANADTIHI VDFGISYGFQ WPALIHRLSF RPGGPPKLRI  480
TGIELPQRGF RPAEGVHETG HRLARYCQRY KVPFEYNAIA QKWETIRVED LKIEQGEFVV  540
VNSLFRFKNL LDETVVVNSP RDAVLKLIRK ANPSVFIQAV LSGSYNAPFF VTRFREALFH  600
YSALFDMCDS KLAREDEMRL MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARVIRAG  660
FKQLPLEKEL MQNLKLKIEN GYDKNFDIDQ NGNWLLQGWK GRIVYASSVW VPSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4337671426382Protein SCARECROW
5b3h_A3e-4337671425381Protein SCARECROW
5b3h_D3e-4337671425381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283287KKKSH
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089803001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013657501.10.0scarecrow-like protein 14
RefseqXP_013657558.10.0scarecrow-like protein 14
RefseqXP_013657559.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A078FR760.0A0A078FR76_BRANA; BnaA08g29000D protein
STRINGBra030688.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]