PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089737001
Common NameGSBRNA2T00089737001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 382aa    MW: 42454.1 Da    PI: 6.5179
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089737001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.95.7e-10185241561
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l  
  GSBRNA2T00089737001 185 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSV 241
                          9*******************************************9999877666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-15181245IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.749183246IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-11185236No hitNo description
PfamPF001709.4E-9185237IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-10185239No hitNo description
CDDcd147039.36E-24186235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDKEKPSGLP PPHPPSRYSA FSPNAMKPES SFPHITPSGS SSDANLFSHD ISRMSDNPPK  60
NLGHRRAHSE ILTLPDDLSF DSDLGVVGAA ADGPSFSDDT DEDLLSMYLD MDKFNSSEAS  120
SSQMCEPSEP AWNERPRARH QHSQSMDGTT SIKPEMLMSG TGSNEDAKKA LSAAKLSELA  180
LIDPKRAKRI WANRQSAARS KERKMRYIAE LERKVQTLQT EATSLSAQLT LLQRDTNGLS  240
VENNELKLRV QSMEQQFHLQ DALNEALKEE VQHLKVLTGQ GVSNGASMMS YGGSFGSNQQ  300
FYPNNQSRHT MLAAQQFQQL QIQSQKQQQQ QLHQQQMYQL QQQRIQQHEQ QSGVTELRRP  360
MSSSGLKVSV TSDPEATLTK D*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089737001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892290.0AC189229.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013C03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737650.10.0probable transcription factor PosF21
SwissprotQ040881e-156POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A078FMC20.0A0A078FMC2_BRANA; BnaA08g28440D protein
STRINGBra030637.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-169bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]