PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00089400001 | ||||||||
Common Name | GSBRNA2T00089400001, LOC106357079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 253aa MW: 28492 Da PI: 7.0465 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 7e-18 | 70 | 123 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k GSBRNA2T00089400001 70 KKRRLNMEQVKTLEKTFELGNKLEPERKMQLARVLGLQPRQIAIWFQNRRARWK 123 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.3 | 7.5e-42 | 69 | 160 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE++Fe +kLeperK++lar Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk ++dalk+en+rL++++e+L++e GSBRNA2T00089400001 69 EKKRRLNMEQVKTLEKTFELGNKLEPERKMQLARVLGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKLKFDALKAENDRLQTHNEKLQAE 158 69**************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 ++ GSBRNA2T00089400001 159 IM 160 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-19 | 59 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.103 | 65 | 125 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-18 | 68 | 129 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.0E-15 | 70 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.67E-16 | 70 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 72 | 132 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.1E-5 | 96 | 105 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.1E-5 | 105 | 121 | IPR000047 | Helix-turn-helix motif |
CDD | cd14686 | 0.00871 | 118 | 159 | No hit | No description |
Pfam | PF02183 | 1.4E-14 | 125 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSCNSGMSFF PSSFMIQNSY EDDHPHQTPA LAPLLPSCSM PQDLNGFASF IGKQILEEDY 60 SDDGSQMGEK KRRLNMEQVK TLEKTFELGN KLEPERKMQL ARVLGLQPRQ IAIWFQNRRA 120 RWKTKQLEKD YDTLKLKFDA LKAENDRLQT HNEKLQAEIM GLENKEQTKS INLNKETEGS 180 CSNKSDNISD NPRLDISRPP PPSIENTITA GHPPPPQTVG RHFFPPSPAT ATTTTTTLQF 240 FQNSSSGQSI YG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 125 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00089400001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353311 | 0.0 | AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013652218.1 | 0.0 | homeobox-leucine zipper protein ATHB-13 | ||||
Refseq | XP_018508499.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 1e-149 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A078IED4 | 0.0 | A0A078IED4_BRANA; BnaA07g24100D protein | ||||
TrEMBL | A0A397YP30 | 0.0 | A0A397YP30_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CIE7 | 0.0 | M4CIE7_BRARP; Uncharacterized protein | ||||
STRING | Bra003980.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2633 | 27 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-150 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106357079 |
Publications ? help Back to Top | |||
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