PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00089119001 | ||||||||
Common Name | GSBRNA2T00089119001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 180aa MW: 19762.2 Da PI: 9.8036 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.4 | 7.1e-22 | 47 | 138 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +W+ +e+ aLi+++r+++++l+rg+lk+++Weev++++ + g+ +++++qC++k+e+l++ry+++ +++++ ++ +s++++++++ GSBRNA2T00089119001 47 CWSLEETTALIDGYRDKWHALGRGNLKANHWEEVAEAVaaACPGVapRKTAVQCRHKMEKLRQRYRAEIQRARSVpVARFVSSWVHYKRM 136 7************************************977344444488*************************977999********** PP trihelix 86 ea 87 ea GSBRNA2T00089119001 137 EA 138 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.5E-19 | 46 | 139 | No hit | No description |
PROSITE profile | PS50090 | 6.33 | 48 | 108 | IPR017877 | Myb-like domain |
SMART | SM00595 | 4.4E-10 | 55 | 144 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MSDPDSPPTH DPIPDRDQPE PASATDPKIA SVPATASKSS RRLPPPCWSL EETTALIDGY 60 RDKWHALGRG NLKANHWEEV AEAVAAACPG VAPRKTAVQC RHKMEKLRQR YRAEIQRARS 120 VPVARFVSSW VHYKRMEAME ITKPDGEENQ FSGGGPTPRF FNRNAAAAAA GSGFGYRRV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6015 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00089119001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ315598 | 7e-83 | AJ315598.1 Brassica napus microsatellite, clone Na10-F06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013691635.1 | 1e-105 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A078IGG7 | 1e-129 | A0A078IGG7_BRANA; BnaC04g05120D protein | ||||
STRING | Bo4g023990.1 | 1e-103 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8963 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 3e-74 | Trihelix family protein |
Publications ? help Back to Top | |||
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