PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00088839001 | ||||||||
Common Name | GSBRNA2T00088839001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 290aa MW: 32607.1 Da PI: 5.4151 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 22 | 66 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++ ++++++ +G++ W++Iar+++ gRt++++k++w+++ GSBRNA2T00088839001 22 RGEFSQEEEDSIIRLHAIHGNK-WSAIARRLP-GRTDNEVKNHWNTH 66 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.391 | 1 | 16 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 2 | 28 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.89E-22 | 3 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.714 | 17 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-17 | 21 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 22 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.55E-13 | 24 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-22 | 29 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
LRRCGKSCRL RWANYLRPDI KRGEFSQEEE DSIIRLHAIH GNKWSAIARR LPGRTDNEVK 60 NHWNTHIKKR LIKKGIDPLT HKSLNGKSSD HPETPPDKSS VHQDDDDQKS NKNNALGSLS 120 ARFLNRVANR FGKRINQSVL SDIIGSGDPF TSFTTPTTSA SECEKSSSSF SKPNSSDLLI 180 NENMILDATS LSSSTFSSDT SDPSVYDHIF DDLEDMTAFS SRFLNDVVSH DDEDFLMLDE 240 SCLEKTSFMR ELTRILQDDK IETTMCSDSR VTPISEVDVS FEGIDNYFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-20 | 3 | 71 | 40 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes. {ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00088839001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ670120 | 0.0 | KJ670120.1 Brassica napus MYB transcription factor 122 (MYB122.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009128025.1 | 0.0 | PREDICTED: transcription factor MYB122-like | ||||
Refseq | XP_013676724.1 | 0.0 | transcription factor MYB122-like | ||||
Swissprot | Q9C9C8 | 1e-127 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | A0A078JRU9 | 0.0 | A0A078JRU9_BRANA; BnaAnng30810D protein (Fragment) | ||||
STRING | Bra008131.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74080.1 | 1e-109 | myb domain protein 122 |