PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00088744001

Common Name

GSBRNA2T00088744001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 171aa MW: 19843.1 Da PI: 6.9461

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00088744001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.4	1.1e-11	87	135	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 +++rr+ +NRe+ArrsR RK+ ++eL v L + N L+++l++ GSBRNA2T00088744001 87 RKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNDNNCLIDKLNSVL 135 79****************************************9999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-12	83	147	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.254	85	148	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.1E-10	87	144	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-10	87	159	No hit	No description
SuperFamily	SSF57959	7.03E-12	87	136	No hit	No description
CDD	cd14702	2.87E-17	88	136	No hit	No description
PROSITE pattern	PS00036	0	90	105	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MIPAEITGYF QYLSPEDLTM IPAEFNVINM PSSPTSSSSL NYLNDLINNN NYSSSSNGQD 60 LMLSNNSTSD EDYHHNHRQS IIILDERKQR RMLSNRESAR RSRMRKQRHL DELWSQVIRL 120 RNDNNCLIDK LNSVLETQDN VLKENSKLKE EASDLRRLVC DLKSNKYNSF *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	106	RRSRMRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00088744001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009152133.1	1e-120	PREDICTED: basic leucine zipper 43-like
TrEMBL	A0A078IDD1	1e-119	A0A078IDD1_BRANA; BnaA06g33560D protein
TrEMBL	A0A397Z7H9	1e-119	A0A397Z7H9_BRACM; Uncharacterized protein
TrEMBL	M4E8N8	1e-119	M4E8N8_BRARP; Uncharacterized protein
STRING	Bra025144.1-P	1e-120	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2892	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04038.1	8e-66	basic leucine-zipper 48

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]