PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00088595001

Common Name

GSBRNA2T00088595001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 265aa MW: 29380.9 Da PI: 6.783

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00088595001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.7	8.2e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC +Cv+apyf+++q +++fa++h++FGasn +kll++lp ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ + GSBRNA2T00088595001 7 PCGACKFLRRKCIYGCVFAPYFCHDQgASHFAAIHQVFGASNASKLLSQLPMQDRCEAAITIYYEAQARLQDPIYGCVAHIFSLQQQVVN 96 7***********************89********************************************************** PP DUF260 90 lkaelallkee 100 l+a+l+ lk++ GSBRNA2T00088595001 97 LQAQLEILKQQ 107 *****9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.544	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-35	7	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF13456	2.4E-8	203	255	No hit	No description
CDD	cd06222	2.43E-8	204	253	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MTGSGSPCGA CKFLRRKCIY GCVFAPYFCH DQGASHFAAI HQVFGASNAS KLLSQLPMQD 60 RCEAAITIYY EAQARLQDPI YGCVAHIFSL QQQVVNLQAQ LEILKQQATQ SMMTTDTPSL 120 ENPNYYRDTK LQQLQQSLDL HRHHNRHHQD RSLDTESDSD LKNIMTSYSE LDQHLNTFNQ 180 YHNGGNDVLS ASFGKNSSSN GVATLIRAIN NDAQVKEIFG IVKDIQELSS VFVEISFAHV 240 PRSSNVEADR LAKLALSVSV VSNP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-34	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	3e-34	3	102	7	105	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00088595001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473848	1e-138	AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142064.1	1e-136	PREDICTED: LOB domain-containing protein 17
Refseq	XP_013747417.1	1e-136	LOB domain-containing protein 17-like
Swissprot	Q9SLB6	5e-96	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	A0A078IAR0	0.0	A0A078IAR0_BRANA; BnaA04g24480D protein
STRING	Bra016876.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	2e-88	LBD family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]